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General definitions of horizontal and vertical amplitudes for linear coupled motion are developed from the normal form of the one-turn matrix. This leads to the identification of conditions on the matrix that give rise to the linear coupling sum and difference resonances. The correspondence with the standard hamiltonian treatment of the resonances is discussed.

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A large number of GE techniques can be adapted from other microorganisms to biothreat bacteria and viruses. Detection of GE in a microorganism increases in difficulty as the size of the genetic change decreases. In addition to the size of the engineered change, the consensus genomic sequence of the microorganism can impact the difficulty of detecting an engineered change in genomes that are highly variable from strain to strain. This problem will require comprehensive databases of whole genome sequences for more genetically variable biothreat bacteria and viruses. Preliminary work with microarrays for detecting synthetic elements or virulence genes and analytic bioinformatic approaches for whole genome sequence comparison to detect genetic engineering show promise for attacking this difficult problem but a large amount of future work remains.

This project is a research and development program aimed at furthering distributed wind technology. In particular, this project addresses some of the barriers to distributed wind energy utilization in Idaho.

The project investigated fundamental aspects of carbon metabolism and genetics in the methane-producing archaeon Methanococcus maripaludis. The project yielded 23 peer-reviewed publications and five reviews from 1997-2007. PDFs of the peer-reviewed publications are included in the next section. Some papers of special interest are listed below. The pathway of pyruvate biosynthesis was elucidated by a combination of biochemical and physiological studies. This work characterized the very oxygen sensitive pyruvate oxidoreductase and showed that the enzyme was irreversible under physiological conditions. Evidence for the flow of electrons from the energy coupling hydrogenase b (Ehb) was presented. These results were published in the following papers. Yang, Y.L., J.N. Gluska, and W.B. Whitman (2002) Intracellular pyruvate flux in the methane-producing archaeon Methanococcus maripaludis. Arch. Microbiol. 178: 493-498. Lin, W.C., Y.L. Yang, and W.B. Whitman (2003) The anabolic pyruvate oxidoreductase from Methanococcus maripaludis. Arch. Microbiol. 179: 444-456. Lin, W., and W.B. Whitman (2004) The importance of porE and porF in the anabolic pyruvate oxidoreductase of Methanococcus maripaludis. Arch. Microbiol. 181: 68-73. Porat, I., W. Kim, E.L. Hendrickson, Q. Xia, Y. Zhang, T. Wang, F. Taub, B.C. Moore, I.J. Anderson, M. Hackett, J.A. Leigh, and W.B. Whitman (2006) Disruption of the Ehb hydrogenase operon limits …

A sample of PUREX sludge from Tank 4 was characterized, and subsequently combined with a Tank 51 sample (Tank 51-E1) received following Al dissolution, but prior to a supernate decant by the Tank Farm, to perform a settling and washing study to support Sludge Batch 6 preparation. The sludge source for the majority of the Tank 51-E1 sample is Tank 12 HM sludge. The Tank 51-E1 sample was decanted by SRNL prior to use in the settling and washing study. The Tank 4 sample was analyzed for chemical composition including noble metals. The characterization of the Tank 51-E1 sample, used here in combination with the Tank 4 sample, was reported previously. SRNL analyses on Tank 4 were requested by Liquid Waste Engineering (LWE) via Technical Task Request (TTR) HLE-TTR-2009-103. The sample preparation work is governed by Task Technical and Quality Assurance Plan (TTQAP), and analyses were controlled by an Analytical Study Plan and modifications received via customer communications. Additional scope included a request for a settling study of decanted Tank 51-E1 and a blend of decanted Tank 51-E1 and Tank 4, as well as a washing study to look into the fate of undissolved sulfur observed during the Tank 4 …

The U.S. wood products industry is a leader in the production of innovative wood materials. New products are taking shape within a growth industry for fiberboard, plywood, particle board, and other natural material-based energy efficient building materials. However, at the same time, standards for clean air are becoming ever stricter. Emissions of volatile organic compounds (VOCs) and hazardous air pollutants (HAPs) during production of wood products (including methanol, formaldehyde, acetylaldehyde, and mercaptans) must be tightly controlled. Conventional VOC and HAP emission control techniques such as regenerative thermal oxidation (RTO) and regenerative catalytic oxidation (RCO) require significant amounts of energy and generate secondary pollutants such as nitrogen oxides and spent carbon. Biological treatment of air emissions offers a cost-effective and sustainable control technology for industrial facilities facing increasingly stringent air emission standards. A novel biological treatment system that integrates two types of biofilter systems, promises significant energy and cost savings. This novel system uses microorganisms to degrade air toxins without the use of natural gas as fuel or the creation of secondary pollutants. The replacement of conventional thermal oxidizers with biofilters will yield natural gas savings alone in the range of $82,500 to $231,000 per year per unit. Widespread use of …

This study involved developing methods to expose transparent encapsulant materials to high (40 to 45 UV suns) optical fluxes of UV radiation to enable rapid evaluation of materials.

Electricity consumption in the Southeastern US, not including Florida, is approximately 24% of the total US. The availability of renewable resources for electricity production is relatively small compared to the high consumption. Therefore meeting a national renewable portfolio standard (RPS) is particularly challenging in this region. Neighboring regions, particularly to the west, have significant wind resources and given sufficient long distant transmission these resources could serve energy markets in the SE. This report looks at renewable resource supply relative to demands and the potential for power transfer into the SE. It shows that development of wind resources will depend not only on available transmission capacity but also on electricity supply and demand factors.

This report was funded by the U.S. Department of Energy's (DOE's) National Energy Technology Laboratory (NETL) Existing Plants Research Program, which has an energy-water research effort that focuses on water use at power plants. This study complements their overall research effort by evaluating water availability at power plants under drought conditions. While there are a number of competing demands on water uses, particularly during drought conditions, this report focuses solely on impacts to the U.S. steam electric power plant fleet. Included are both fossil-fuel and nuclear power plants. One plant examined also uses biomass as a fuel. The purpose of this project is to estimate the impact on generation capacity of a drop in water level at U.S. steam electric power plants due to climatic or other conditions. While, as indicated above, the temperature of the water can impact decisions to halt or curtail power plant operations, this report specifically examines impacts as a result of a drop in water levels below power plant submerged cooling water intakes. Impacts due to the combined effects of excessive temperatures of the returned cooling water and elevated temperatures of receiving waters (due to high ambient temperatures associated with drought) may be examined in …

Tensions between the energy and water sectors occur when demand for electric power is high and water supply levels are low. There are several regions of the country, such as the western and southwestern states, where the confluence of energy and water is always strained due to population growth. However, for much of the country, this tension occurs at particular times of year (e.g., summer) or when a region is suffering from drought conditions. This report discusses prior work on the interdependencies between energy and water. It identifies the types of power plants that are most likely to be susceptible to water shortages, the regions of the country where this is most likely to occur, and policy options that can be applied in both the energy and water sectors to address the issue. The policy options are designed to be applied in the near term, applicable to all areas of the country, and to ease the tension between the energy and water sectors by addressing peak power demand or decreased water supply.

The Defense Waste Processing Facility (DWPF) is currently processing Sludge Batch 5 (SB5) from Tank 40. SB5 contains the contents of Tank 51 from November 2008, qualified by the Savannah River National Laboratory (SRNL) and the heel in Tank 40 remaining from Sludge Batch 4. Current Liquid Waste Operations (LWO) plans are to (1) decant supernatant from Tank 40 to remove excess liquid caused by a leaking slurry pump and (2) receive a Np stream from H Canyon It should be noted that the Np stream contains significant nitrate requiring addition of nitrite to Tank 40 to maintain a high nitrite to nitrate ratio for corrosion control. SRNL has been requested to qualify the proposed changes; determine the impact on DWPF processability in terms of hydrogen generation, rheology, etc.; evaluate antifoam addition strategy; and evaluate mercury stripping. Therefore, SRNL received a 3 L sample of Tank 40 following the transfer of Tank 51 to Tank 40 (Tank Farm Sample HTF-40-08-157 to be used in testing and to perform the required Waste Acceptance Product Specifications radionuclide analyses). Based on Tank Farm projections, SRNL decanted a portion* of the sample, added sodium nitrite, and added a Np solution from H Canyon representative …

Application performance is determined by a combination of many choices: hardware platform, runtime environment, languages and compilers used, algorithm choice and implementation, and more. In this complicated environment, we find that the use of mini-applications - small self-contained proxies for real applications - is an excellent approach for rapidly exploring the parameter space of all these choices. Furthermore, use of mini-applications enriches the interaction between application, library and computer system developers by providing explicit functioning software and concrete performance results that lead to detailed, focused discussions of design trade-offs, algorithm choices and runtime performance issues. In this paper we discuss a collection of mini-applications and demonstrate how we use them to analyze and improve application performance on new and future computer platforms.

"This project was established to provide a means of conducting small-scale research activities on an as needed basis so that the results could be available within months of starting the specific research. This report summarizes the small-scale research activities that were conducted between September 2008 and August 2009." (p. i).

Pacific Northwest National Laboratory (PNNL) has embarked on an initiative to develop world-class capabilities for performing experimental and computational analyses associated with geologic sequestration of carbon dioxide. The ultimate goal of this initiative is to provide science-based solutions for helping to mitigate the adverse effects of greenhouse gas emissions. This Laboratory-Directed Research and Development (LDRD) initiative currently has two primary focus areas—advanced experimental methods and computational analysis. The experimental methods focus area involves the development of new experimental capabilities, supported in part by the U.S. Department of Energy’s (DOE) Environmental Molecular Science Laboratory (EMSL) housed at PNNL, for quantifying mineral reaction kinetics with CO2 under high temperature and pressure (supercritical) conditions. The computational analysis focus area involves numerical simulation of coupled, multi-scale processes associated with CO2 sequestration in geologic media, and the development of software to facilitate building and parameterizing conceptual and numerical models of subsurface reservoirs that represent geologic repositories for injected CO2. This report describes work in support of the computational analysis focus area. The computational analysis focus area currently consists of several collaborative research projects. These are all geared towards the development and application of conceptual and numerical models for geologic sequestration of CO2. The software being …

This report evaluates the damage cause by Hurricane Rita to the benthic habitats of four banks: Sonnier, McGrail, Geyer, and Bright. They measured the damage to bank caps the community structure, and used SCUBA to video record the evidence.

This technical report documents the results of geochemical and soil resistivity characterization of sediment obtained from four boreholes drilled in the BC Cribs and Trench area. Vadose zone sediment samples were obtained at a frequency of about every 2.5 ft from approximately 5 ft bgs to borehole total depth. In total, 505 grab samples and 39 six-inch long cores were obtained for characterization. The pore-water chemical composition data, laboratory-scale soil resistivity and other ancillary physical and hydrologic measurements and analyses described in this report are designed to provide a crucial link between direct measurements on sediments and the surface-based electrical-resistivity information obtained via field surveys. A second goal of the sediment characterization was to measure the total and water-leachable concentrations of key contaminants of concern as a function of depth and distance from the footprints of inactive disposal facilities. The total and water-leachable concentrations of key contaminants will be used to update contaminant distribution conceptual models and to provide more data for improving base-line risk predictions and remedial alternative selections. The ERC “ground truthing” exercise for the individual boreholes showed mixed results. In general, the high concentrations of dissolved salts in the pore waters of sediments from C5923, C5924 and …

The answers to fundamental science questions in astrophysics, ranging from the history of the expansion of the universe to the sizes of nearby stars, hinge on our ability to make precise measurements of diverse astronomical objects. As our knowledge of the underlying physics of objects improves along with advances in detectors and instrumentation, the limits on our capability to extract science from measurements is set, not by our lack of understanding of the nature of these objects, but rather by the most mundane of all issues: the precision with which we can calibrate observations in physical units. In principle, photometric calibration is a solved problem - laboratory reference standards such as blackbody furnaces achieve precisions well in excess of those needed for astrophysics. In practice, however, transferring the calibration from these laboratory standards to astronomical objects of interest is far from trivial - the transfer must reach outside the atmosphere, extend over 4{pi} steradians of sky, cover a wide range of wavelengths, and span an enormous dynamic range in intensity. Virtually all spectrophotometric observations today are calibrated against one or more stellar reference sources, such as Vega, which are themselves tied back to laboratory standards in a variety of ways. …

The goal of this program was to design, build, test, and characterize a flight qualified calibration source and monitor for a Dark Energy related experiment: ACCESS - 'Absolute Color Calibration Experiment for Standard Stars'. This calibration source, the On-board Calibration Monitor (OCM), is a key component of our ACCESS spectrophotometric calibration program. The OCM will be flown as part of the ACCESS sub-orbital rocket payload in addition to monitoring instrument sensitivity on the ground. The objective of the OCM is to minimize systematic errors associated with any potential changes in the ACCESS instrument sensitivity. Importantly, the OCM will be used to monitor instrument sensitivity immediately after astronomical observations while the instrument payload is parachuting to the ground. Through monitoring, we can detect, track, characterize, and thus correct for any changes in instrument senstivity over the proposed 5-year duration of the assembled and calibrated instrument.

May report of the U.S. Congressional Oversight Panel describing their activities and findings regarding consumer lending to small businesses and households through the Term Asset-Backed Securities Loan Facility program (TALF).

This technical report documents the results of laboratory geochemical and hydrologic measurements of sediments collected from new borehole 299-E13-65 (C7047) and comparison of the results with those of nearby borehole 299-13E-62 (C5923) both drilled in the BC Cribs and Trenches Area. The total and water-leachable concentrations of key contaminants will be used to update contaminant-distribution conceptual models and to provide more data for improving baseline risk predictions and remedial alternative selections. Improved understanding of subsurface conditions and methods to remediate these principal contaminants can be also used to evaluate the application of specific technologies to other contaminants across the Hanford Site.

The Altair Lunar Lander will enable astronauts to learn to live and work on the moon for extended periods of time, providing the experience needed to expand human exploration farther into the solar system. My overriding recommendation: Use independent and complementary [sometimes referred to as 'orthogonal'] techniques to disambiguate confounding/interfering signals. E.g.: a mass spectrometer ['MS'], which currently serves as a Majority Constituent Analyzer ['MCA'] can be very valuable in detecting the presence of a gaseous specie, so long as it falls on a mass-to-charge ratio ['m/z'] that is not already occupied by a majority constituent of cabin air. Consider the toxic gas, CO. Both N{sub 2} and CO have parent peaks of m/z = 28, and CO{sub 2} has a fragment peak at m/z = 28 [and at 16 and 12], so the N{sub 2} and CO{sub 2} m/z=28 signals could mask low, but potentially-dangerous levels of CO. However there are numerous surface-sensitive CO detectors, as well as tunable-diode-laser-based CO sensors that could provide independent monitoring of CO. Also, by appending a gas chromatograph ['GC'] as the front-end sample processer, prior to the inlet of the MS, one can rely upon the GC to separate CO from N{sub 2} …

The bacterial genus Shewanella includes a group of highly versatile organisms that have successfully adapted to life in many environments ranging from aquatic (fresh and marine) to sedimentary (lake and marine sediments, subsurface sediments, sea vent). A unique respiratory capability of the Shewanellas, initially observed for Shewanella oneidensis MR-1, is the ability to use metals and metalloids, including radioactive compounds, as electron acceptors. Members of the Shewanella genus have also been shown to degrade environmental pollutants i.e. halogenated compounds, making this group highly applicable for the DOE mission. S. oneidensis MR-1 has in addition been found to utilize a diverse set of nutrients and to have a large set of genes dedicated to regulation and to sensing of the environment. The sequencing of the S. oneidensis MR-1 genome facilitated experimental and bioinformatics analyses by a group of collaborating researchers, the Shewanella Federation. Through the joint effort and with support from Department of Energy S. oneidensis MR-1 has become a model organism of study. Our work has been a functional analysis of S. oneidensis MR-1, both by itself and as part of a comparative study. We have improved the annotation of gene products, assigned metabolic functions, and analyzed protein families present …