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Gene-based association tests using GWAS summary statistics and incorporating eQTL
Article proposes a powerful and computationally efficient gene-based association test, called Overall. Using extended Simes procedure, Overall aggregates information from three types of traditional gene-based association tests and also incorporates expression quantitative trait locus (eQTL) information into a gene-based association test using GWAS summary statistics. The results show that this newly developed method can identify more significant genes than other methods.
Date:
March 3, 2022
Creator:
Cao, Xuwei; Wang, Xuexia; Zhang, Shuanglin & Sha, Qiuying
Object Type:
Article
System:
The UNT Digital Library
A novel statistical method for rare-variant association studies in general pedigrees
In this paper, the authors discuss a novel statistical method for rare-variant association studies in general pedigrees for quantitative traits. This method uses a retrospective view that treats the traits as fixed and the genotypes as random, which accounts for complex and undefined ascertainment of families.
Date:
October 18, 2016
Creator:
Zhu, Huanhuan; Wang, Zhenchuan; Wang, Xuexia & Sha, Qiuying
Object Type:
Paper
System:
The UNT Digital Library
Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing
This article demonstrates that whole genome sequencing is an efficient approach for identification of causative genes underlying symbiotic nitrogen fixation defective phenotypes in Medicago truncatula Tnt1 insertion mutants obtained via forward genetic screens.
Date:
February 27, 2016
Creator:
Veerappan, Vijaykumar; Jani, Mehul; Kadel, Khem; Troiani, Taylor; Gale, Ronny; Mayes, Tyler et al.
Object Type:
Article
System:
The UNT Digital Library