Operation and Maintenance of the National Radiobiology Archives (open access)

Operation and Maintenance of the National Radiobiology Archives

The National Radiobiology Archives (NRA) are an archival program, started in 1989, to collect, organize and maintain data, laboratory notebooks, and animal tissue specimens from government (Department of Energy and its predecessor agencies) sponsored radiobiology life-span animal studies. These unique records, histopathology slides and paraffin embedded tissue blocks are maintained in a central facility and are available for further research study. The materials include electronic and paper records for each of more than 6,000 life-span-observations on dogs as well as details of major studies involving nearly 30,000 mice. Although these studies were performed over many years and at different laboratories with differing data management systems, the NRA has translated them into a standardized set of relational database tables. These can be distributed to interested individuals on written request. Specific Aims are: (1) To Maintain the Archive of Written Records from the Animal Experiments - The USTUR continued to maintain the NRA archives which consist of approximately 175 storage boxes containing laboratory notebooks, animal exposure records, animal pathologic records, and radiographs. These were stored in a 6,000 square foot leased facility in Richland, WA. Additionally, through a collaboration with Pacific Northwest National Laboratory's (PNNL) Low Dose Program, many of these records …
Date: March 7, 2012
Creator: James, Dr. Anthony C. & McCord, Stacey L.
Object Type: Report
System: The UNT Digital Library
Physical Review Online Archives (PROLA) (open access)

Physical Review Online Archives (PROLA)

In cooperation with the American Physical Society, the Computer Research and Applications Group (CIC-3 -- see Section 13 for an acronym glossary) at Los Alamos National Laboratory has developed and deployed a journal archive system called, The Physical Review OnLine Archive (PROLA). It is intended to be a complete, full service on-line archive of the existing issues of the journal Physical Review from its inception to the advent of a full-service electronic version. The fundamental goals of PROLA are to provide screen-viewable and printable images of every article, full-text and fielded search capability, good browsing features, direct article retrieval tools, and hyperlinking to all references, errata, and comments. The research focus is on transitioning large volumes of paper journals to a modern electronic environment.
Date: May 1, 1997
Creator: Thomas, T.; Davies, J.; Kilman, D. & Laroche, F.
Object Type: Report
System: The UNT Digital Library
Historians at Work in the SLAC Archives: An Archivist's Perspective (open access)

Historians at Work in the SLAC Archives: An Archivist's Perspective

None
Date: July 29, 2013
Creator: Deken, Jean Marie
Object Type: Article
System: The UNT Digital Library
Science Archives at SLAC National Accelerator Laboratory (open access)

Science Archives at SLAC National Accelerator Laboratory

None
Date: May 21, 2013
Creator: Deken, Jean Marie
Object Type: Article
System: The UNT Digital Library
National Radiobiology Archives Distributed Access user's manual (open access)

National Radiobiology Archives Distributed Access user's manual

This User's Manual describes installation and use of the National Radiobiology Archives (NRA) Distributed Access package. The package consists of a distributed subset of information representative of the NRA databases and database access software which provide an introduction to the scope and style of the NRA Information Systems.
Date: November 1, 1991
Creator: Watson, C.; Smith, S. (Pacific Northwest Lab., Richland, WA (United States)) & Prather, J. (Linfield Coll., McMinnville, OR (United States))
Object Type: Report
System: The UNT Digital Library
Mining scientific data archives through metadata generation (open access)

Mining scientific data archives through metadata generation

Data analysis and management tools typically have not supported the documenting of data, so scientists must manually maintain all information pertaining to the context and history of their work. This metadata is critical to effective retrieval and use of the masses of archived data, yet little of it exists on-line or in an accessible format. Exploration of archived legacy data typically proceeds as a laborious process, using commands to navigate through file structures on several machines. This file-at-a-time approach needs to be replaced with a model that represents data as collections of interrelated objects. The tools that support this model must focus attention on data while hiding the complexity of the computational environment. This problem was addressed by developing a tool for exploring large amounts of data in UNIX directories via automatic generation of metadata summaries. This paper describes the model for metadata summaries of collections and the Data Miner tool for interactively traversing directories and automatically generating metadata that serves as a quick overview and index to the archived data. The summaries include thumbnail images as well as links to the data, related directories, and other metadata. Users may personalize the metadata by adding a title and abstract to …
Date: April 1, 1997
Creator: Springmeyer, R.; Werner, N. & Long, J.
Object Type: Article
System: The UNT Digital Library
The Fifth Workshop on HPC Best Practices: File Systems and Archives (open access)

The Fifth Workshop on HPC Best Practices: File Systems and Archives

The workshop on High Performance Computing (HPC) Best Practices on File Systems and Archives was the fifth in a series sponsored jointly by the Department Of Energy (DOE) Office of Science and DOE National Nuclear Security Administration. The workshop gathered technical and management experts for operations of HPC file systems and archives from around the world. Attendees identified and discussed best practices in use at their facilities, and documented findings for the DOE and HPC community in this report.
Date: November 30, 2011
Creator: Hick, Jason; Hules, John & Uselton, Andrew
Object Type: Report
System: The UNT Digital Library
Putting the U in the W: A Non-Technical Introduction to Web Sites for Archives (open access)

Putting the U in the W: A Non-Technical Introduction to Web Sites for Archives

A non-technical introduction to the design of web sites for archives based on the experiences of the SLAC Archives and History Office in designing and redesigning its own web site.
Date: March 22, 2006
Creator: O'Hara, Laura
Object Type: Report
System: The UNT Digital Library
National Radiobiology Archives Distributed Access User's Manual, Version 1. 1 (open access)

National Radiobiology Archives Distributed Access User's Manual, Version 1. 1

This supplement to the NRA Distributed Access User's manual (PNL-7877), November 1991, describes installation and use of Version 1.1 of the software package; this is not a replacement of the previous manual. Version 1.1 of the NRA Distributed Access Package is a maintenance release. It eliminates several bugs, and includes a few new features which are described in this manual. Although the appearance of some menu screens has changed, we are confident that the Version 1.0 User's Manual will provide an adequate introduction to the system. Users who are unfamiliar with Version 1.0 may wish to experiment with that version before moving on to Version 1.1.
Date: June 1, 1992
Creator: Smith, S. K.; Prather, J. C.; Ligotke, E. K. & Watson, C. R.
Object Type: Report
System: The UNT Digital Library
Advocacy for the Archives and History Office of the SLAC National Accelerator Laboratory: Stages and Methods (open access)

Advocacy for the Archives and History Office of the SLAC National Accelerator Laboratory: Stages and Methods

Advocating for the good of the SLAC Archives and History Office (AHO) has not been a one-time affair, nor has it been a one-method procedure. It has required taking time to ascertain the current and perhaps predict the future climate of the Laboratory, and it has required developing and implementing a portfolio of approaches to the goal of building a stronger archive program by strengthening and appropriately expanding its resources. Among the successful tools in the AHO advocacy portfolio, the Archives Program Review Committee has been the most visible. The Committee and the role it serves as well as other formal and informal advocacy efforts are the focus of this case study My remarks today will begin with a brief introduction to advocacy and outreach as I understand them, and with a description of the Archives and History Office's efforts to understand and work within the corporate culture of the SLAC National Accelerator Laboratory. I will then share with you some of the tools we have employed to advocate for the Archives and History Office programs and activities; and finally, I will talk about how well - or badly - those tools have served us over the past decade.
Date: June 19, 2009
Creator: Deken, Jean Marie
Object Type: Article
System: The UNT Digital Library
International radiobiology archives of long-term animal studies. I. Descriptions of participating institutions and studies (open access)

International radiobiology archives of long-term animal studies. I. Descriptions of participating institutions and studies

This document describes archived radiobiology animal studies. Information is presented on experimental details, pathology, radioactivity, results, dosimetry, status, and animal type employed.
Date: July 1, 1996
Creator: Gerber, G. B.; Watson, C. R.; Sugahara, T. & Okada, S.
Object Type: Report
System: The UNT Digital Library
National Radiobiology Archives Distributed Access User`s Manual, Version 1.1. Revision 1 (open access)

National Radiobiology Archives Distributed Access User`s Manual, Version 1.1. Revision 1

This supplement to the NRA Distributed Access User`s manual (PNL-7877), November 1991, describes installation and use of Version 1.1 of the software package; this is not a replacement of the previous manual. Version 1.1 of the NRA Distributed Access Package is a maintenance release. It eliminates several bugs, and includes a few new features which are described in this manual. Although the appearance of some menu screens has changed, we are confident that the Version 1.0 User`s Manual will provide an adequate introduction to the system. Users who are unfamiliar with Version 1.0 may wish to experiment with that version before moving on to Version 1.1.
Date: June 1, 1992
Creator: Smith, S. K.; Prather, J. C.; Ligotke, E. K. & Watson, C. R.
Object Type: Report
System: The UNT Digital Library
Analysis of the Costs of a Backlog Project in Response to Recommendation 2 of the 2004 Archives and History Office Program Review Committee Report (open access)

Analysis of the Costs of a Backlog Project in Response to Recommendation 2 of the 2004 Archives and History Office Program Review Committee Report

SLAC Archives and History Office (AHO) backlog of unprocessed material is over 3,000 cubic feet and growing. Because much of this material was directly transferred to off-site storage, the provenance and contents are a mystery. The costs of off-site storage, lack of knowledge of the contents, and the impending federal regulations in 2009 concerning storage facilities all suggest the need for a long-term plan for the backlog. AHO presents these options to SLAC management: (1) Continue with the status quo, adding new accessions to OffSite Records Management, LLC (hereinafter referred to as OffSite) storage; (2) Pull the backlog back a segment at a time for box-level processing, determine what is in each box, get rid of extraneous material, and return what is left to OffSite storage; (3) Gradually retrieve the backlog for thorough, folder-level processing and then transfer to the Federal Records Center in San Bruno (hereinafter referred to as FRC) or the Archives side of the operations at the National Archives and Records Administration in San Bruno (hereinafter referred to as NARA); and (4) Gradually retrieve the backlog for a combination of box-level processing with return to OffSite storage and thorough folder-level processing with transfer to FRC or NARA.
Date: December 21, 2007
Creator: O'Hara, Laura
Object Type: Report
System: The UNT Digital Library
U.S. Department of Energy Best Practices Workshop onFile Systems & Archives San Francisco, CA September 26-27, 2011 Position Paper (open access)

U.S. Department of Energy Best Practices Workshop onFile Systems & Archives San Francisco, CA September 26-27, 2011 Position Paper

This position paper discusses issues of usability of the large parallel file systems in the Livermore Computing Center. The primary uses of these file systems are for storage and access of data that is created during the course of a simulation running on an LC system. The Livermore Computing Center has multiple, globally mounted parallel file systems in each of its computing environments. The single biggest issue of file system usability that we have encountered through the years is to maintain continuous file system responsiveness. Given the back end storage hardware that our file systems are provisioned with, it is easily possible for a particularly I/O intensive application or one with particularly inefficiently coded I/O operations to bring the file system to an apparent halt. The practice that we will be addressing is one of having an ability to indentify, diagnose, analyze and optimize the I/O quickly and effectively.
Date: September 1, 2011
Creator: Hedges, R M
Object Type: Article
System: The UNT Digital Library
Long-Term Spatial Data Preservation and Archiving: What Are the Issues? (open access)

Long-Term Spatial Data Preservation and Archiving: What Are the Issues?

The Department of Energy (DOE) is moving towards Long-Term Stewardship (LTS) of many environmental restoration sites that cannot be released for unrestricted use. One aspect of information management for LTS is geospatial data archiving. This report discusses the challenges facing the DOE LTS program concerning the data management and archiving of geospatial data. It discusses challenges in using electronic media for archiving, overcoming technological obsolescence, data refreshing, data migration, and emulation. It gives an overview of existing guidance and policy and discusses what the United States Geological Service (USGS), National Oceanic and Atmospheric Administration (NOAA) and the Federal Emergency Management Agency (FEMA) are doing to archive the geospatial data that their agencies are responsible for. In the conclusion, this report provides issues for further discussion around long-term spatial data archiving.
Date: January 1, 2002
Creator: BLEAKLY, DENISE R.
Object Type: Report
System: The UNT Digital Library
Correspondence (Top Secret) of the Manhattan Engineer District, 1942--1946 (open access)

Correspondence (Top Secret) of the Manhattan Engineer District, 1942--1946

This pamphlet prepared by the National Archives Trust Fund Board, National Archives Records Service provides an overview to a collection of formerly security classified `Top Secret` correspondence maintained by Major General Leslie Groves when commanding general of the Manhattan District from September, 1942 to December, 1946. The pamphlet describes the administrative history of the record collection. The records are described as well as how they are arranged along with finding aids and content of records. For further details concerning the se records the user is referred to the US National Archives, Washington.
Date: December 31, 1982
Creator: unknown
Object Type: Report
System: The UNT Digital Library
ESTABLISHMENT OF THE CENTER FOR ADVANCED SEPARATION TECHNOLOGIES (open access)

ESTABLISHMENT OF THE CENTER FOR ADVANCED SEPARATION TECHNOLOGIES

None
Date: January 16, 2005
Creator: Hull, Christopher E.
Object Type: Report
System: The UNT Digital Library
Determination of the Prebomb Southern (Antartic) Ocean Radiocarbon in Organic Matter (open access)

Determination of the Prebomb Southern (Antartic) Ocean Radiocarbon in Organic Matter

The Southern Hemisphere is an important and unique region of the world's oceans for water-mass formation and mixing, upwelling, nutrient utilization, and carbon export. In fact, one of the primary interests of the oceanographic community is to decipher the climatic record of these processes in the source or sink terms for Southern Ocean surface waters in the CO{sub 2} balance of the atmosphere. Current coupled ocean-atmosphere modeling efforts to trace the input of CO{sub 2} into the ocean imply a strong sink of anthropogenic CO{sub 2} in the southern ocean. However, because of its relative inaccessibility and the difficulty in directly measuring CO{sub 2} fluxes in the Southern Ocean, these results are controversial at best. An accepted diagnostic of the exchange of CO{sub 2} between the atmosphere and ocean is the prebomb distribution of radiocarbon in the ocean and its time-history since atmospheric nuclear testing. Such histories of {sup 14}C in the surface waters of the Southern Ocean do not currently exist, primarily because there are few continuous biological archives (e.g., in corals) such as those that have been used to monitor the {sup 14}C history of the tropics and subtropics. One of the possible long-term archives is the scallop …
Date: February 26, 2001
Creator: Guilderson, T. P.
Object Type: Report
System: The UNT Digital Library
Thar`s gold in them thar notebooks: benefits of laboratory notebooks in the government archive (open access)

Thar`s gold in them thar notebooks: benefits of laboratory notebooks in the government archive

As Archive Coordinator for Sandia National Laboratories Corporate Archives, I am responsible for promoting the preservation and value of Sandia`s history. Today I will talk about one important part of Sandia`s historical record--the laboratory notebook. I will start with some brief background on Sandia National Laboratories, including the Laboratories` mission and an example of how the gold in one lab notebook helped to give a picture of Sandia`s early history. Next, I will talk about the use of notebooks at Sandia Labs, how they represent technology developed at Sandia, and include noteworthy examples of how patent information has been collected, used, and released to the public. Then, I will discuss how the National Competitiveness Technology Transfer Act of 1989 authorized technology transfer initiatives and the exclusive use of patented information, resulting in many golden opportunities for the national laboratories to work with private industry to further technology. I will briefly discuss laboratory notebook retention schedules and mention a new initiative to better utilize Laboratory notebooks. And, finally, I will summarize how the `gold` in laboratory notebooks in government archives are a reflection of the valuable and extensive research authorized and funded by the government to benefit the public.
Date: January 1, 1996
Creator: O`Canna, M.
Object Type: Article
System: The UNT Digital Library
Reconstructing Ocean Circulation using Coral (triangle)14C Time Series (open access)

Reconstructing Ocean Circulation using Coral (triangle)14C Time Series

We utilize monthly {sup 14}C data derived from coral archives in conjunction with ocean circulation models to address two questions: (1) how does the shallow circulation of the tropical Pacific vary on seasonal to decadal time scales and (2) which dynamic processes determine the mean vertical structure of the equatorial Pacific thermocline. Our results directly impact the understanding of global climate events such as the El Nino-Southern Oscillation (ENSO). To study changes in ocean circulation and water mass distribution involved in the genesis and evolution of ENSO and decadal climate variability, it is necessary to have records of climate variables several decades in length. Continuous instrumental records are limited because technology for continuous monitoring of ocean currents (e.g. satellites and moored arrays) has only recently been available, and ships of opportunity archives such as COADS contain large spatial and temporal biases. In addition, temperature and salinity in surface waters are not conservative and thus can not be independently relied upon to trace water masses, reducing the utility of historical observations. Radiocarbon in sea water is a quasi-conservative water mass tracer and is incorporated into coral skeletal material, thus coral {sup 14}C records can be used to reconstruct changes in shallow …
Date: February 23, 2001
Creator: Kashgarian, M. & Guilderson, T. P.
Object Type: Report
System: The UNT Digital Library
A work bibliography on native food consumption, demography and lifestyle. Hanford Environmental Dose Reconstruction Project (open access)

A work bibliography on native food consumption, demography and lifestyle. Hanford Environmental Dose Reconstruction Project

The purpose of this report is to provide a bibliography for the Native American tribe participants in the Hanford Environmental Dose Reconstruction (HEDR) Project to use. The HEDR Project`s primary objective is to estimate the radiation dose that individuals could have received as a result of emissions since 1944 from the US Department of Energy`s Hanford Site near Richland, Washington. Eight Native American tribes are responsible for estimating daily and seasonal consumption of traditional foods, demography, and other lifestyle factors that could have affected the radiation dose received by tribal members. This report provides a bibliography of recorded accounts that tribal researchers may use to verify their estimates. The bibliographic citations include references to information on the specific tribes, Columbia River plateau ethnobotany, infant feeding practices and milk consumption, nutritional studies and radiation, tribal economic and demographic characteristics (1940--1970), research methods, primary sources from the National Archives, regional archives, libraries, and museums.
Date: December 1, 1992
Creator: Murray, C. E. & Lee, W. J.
Object Type: Report
System: The UNT Digital Library
Best Practices Workshop Position Paper - Reliability (open access)

Best Practices Workshop Position Paper - Reliability

None
Date: August 30, 2011
Creator: Gary, M R
Object Type: Article
System: The UNT Digital Library
Biogeochemical Proxies in Scleractinian Corals used to Reconstruct Ocean Circulation (open access)

Biogeochemical Proxies in Scleractinian Corals used to Reconstruct Ocean Circulation

We utilize monthly {sup 14}C data derived from coral archives in conjunction with ocean circulation models to address two questions: (1) how does the shallow circulation of the tropical Pacific vary on seasonal to decadal time scales and (2) which dynamic processes determine the mean vertical structure of the equatorial Pacific thermocline. Our results directly impact the understanding of global climate events such as the El Nino-Southern Oscillation (ENSO). To study changes in ocean circulation and water mass distribution involved in the genesis and evolution of ENSO and decadal climate variability, it is necessary to have records of climate variables several decades in length. Continuous instrumental records are limited because technology for continuous monitoring of ocean currents has only recently been available, and ships of opportunity archives such as COADS contain large spatial and temporal biases. In addition, temperature and salinity in surface waters are not conservative and thus can not be independently relied upon to trace water masses, reducing the utility of historical observations. Radiocarbon ({sup 14}C) in sea water is a quasi-conservative water mass tracer and is incorporated into coral skeletal material, thus coral {sup 14}C records can be used to reconstruct changes in shallow circulation that would …
Date: February 23, 2001
Creator: Guilderson, T. P.; Kashgarian, M. & Schrag, D. P.
Object Type: Article
System: The UNT Digital Library
Biogeochemical Proxies in Scleractinian Corals used to Reconstruct Ocean Circulation (open access)

Biogeochemical Proxies in Scleractinian Corals used to Reconstruct Ocean Circulation

We utilize monthly {sup 14}C data derived from coral archives in conjunction with ocean circulation models to address two questions: (1) how does the shallow circulation of the tropical Pacific vary on seasonal to decadal time scales and (2) which dynamic processes determine the mean vertical structure of the equatorial Pacific thermocline. Our results directly impact the understanding of global climate events such as the El Nino-Southern Oscillation (ENSO). To study changes in ocean circulation and water mass distribution involved in the genesis and evolution of ENSO and decadal climate variability, it is necessary to have records of climate variables several decades in length. Continuous instrumental records are limited because technology for continuous monitoring of ocean currents has only recently been available, and ships of opportunity archives such as COADS contain large spatial and temporal biases. In addition, temperature and salinity in surface waters are not conservative and thus can not be independently relied upon to trace water masses, reducing the utility of historical observations. Radiocarbon ({sup 14}C) in sea water is a quasi-conservative water mass tracer and is incorporated into coral skeletal material, thus coral {sup 14}C records can be used to reconstruct changes in shallow circulation that would …
Date: February 23, 2001
Creator: Guilderson, Thomas P.; Kashgarian, Michaele & Schrag, Daniel P.
Object Type: Article
System: The UNT Digital Library