The Role of INSPIRE in HEP Data Preservation Efforts (open access)

The Role of INSPIRE in HEP Data Preservation Efforts

INSPIRE is a new community resource for HEP literature and associated information. It is based on the combination of SPIRES content and features and the powerful Invenio software developed at CERN. The INSPIRE service will come online in fall of 2009, and be run by CERN, DESY, Fermilab and SLAC. Data preservation, to be successful, must not only preserve the data, but must also organize it and allow it to be found by those who would make use of it, and resources such as INSPIRE are ideally positioned and ready to provide this organization and context. In addition, INSPIRE will soon be ready to provide storage of smaller datasets, such as high-level analysis objects, as stand-alone objects placed in the repository or as objects associated with an analysis paper. This small project could pave the way towards the context and organization which is one piece of the infrastructure needed for all levels of data preservation.
Date: June 11, 2010
Creator: Brooks, Travis C.
Object Type: Article
System: The UNT Digital Library
Center for Technology for Advanced Scientific Component Software (TASCS) (open access)

Center for Technology for Advanced Scientific Component Software (TASCS)

The UO portion of the larger TASCS project was focused on the usability subproject identified in the original project proposal. The key usability issue that we tacked was that of supporting legacy code developers in migrating to a component-oriented design pattern and development model with minimal manual labor. It was observed during the lifetime of the TASCS (and previous CCA efforts) that more often than not, users would arrive with existing code that was developed previous to their exposure to component design methods. As such, they were faced with the task of both learning the CCA toolchain and at the same time, manually deconstructing and reassembling their existing code to fit the design constraints imposed by components. This was a common complaint (and occasional reason for a user to abandon components altogether), so our task was to remove this manual labor as much as possible to lessen the burden placed on the end-user when adopting components for existing codes. To accomplish this, we created a source-based static analysis tool that used code annotations to drive code generation and transformation operations. The use of code annotations is due to one of the key technical challenges facing this work | programming languages …
Date: June 30, 2010
Creator: Sottile, Dr. Mathew
Object Type: Report
System: The UNT Digital Library
HIV/AIDS Information Resources from the National Library of Medicine-STOP (open access)

HIV/AIDS Information Resources from the National Library of Medicine-STOP

The HIV/AIDS Information Resources from the National Library of Medicine training is designed specifically for the UNCFSP HBCU Screening, Testing, Outreach, and Prevention (STOP) HIV/AIDS Program project members to provide valuable health information resources from the National Library of Medicine and other reliable sources to increase awareness of the wealth of treatment information and educational materials that are available on the Internet and to improve prevention and treatment education for their clients. These resources will also meet the needs of community-based organizations
Date: June 15, 2010
Creator: Templin-Branner, W. and N. Dancy
Object Type: Book
System: The UNT Digital Library
Transnational Islamic activism and radicalization : patterns, trends, and prognosticators. (open access)

Transnational Islamic activism and radicalization : patterns, trends, and prognosticators.

The research described in this report developed the theoretical and conceptual framework for understanding, recognizing, and anticipating the origins, dynamic mechanisms, perceptions, and social structures of Islamic social reform movements in the Muslim homeland and in diaspora communities. This research has revealed valuable insights into the dynamic mechanisms associated with reform movements and, as such, offers the potential to provide indications and warnings of impending violence. This study produced the following significant findings: (1) A framework for understanding Islamic radicalization in the context of Social Movement Theory was developed and implemented. This framework provides a causal structure for the interrelationships among the myriad features of a social movement. (2) The degree to which movement-related activity shows early diffusion across multiple social contexts is a powerful distinguisher of successful and unsuccessful social movements. Indeed, this measurable appears to have significantly more predictive power than volume of such activity and also more power than various system intrinsics. (3) Significant social movements can occur only if both the intra-context 'infectivity' of the movement exceeds a certain threshold and the inter-context interactions associated with the movement occur with a frequency that is larger than another threshold. Note that this is reminiscent of, and significantly …
Date: June 1, 2010
Creator: Colbaugh, Richard; Engi, Dennis; LaViolette, Randall A. & Spomer, Judith E.
Object Type: Report
System: The UNT Digital Library
The Establishment of a Formal Midwest Renewable Energy Tracking System (M-RETS) Organization (open access)

The Establishment of a Formal Midwest Renewable Energy Tracking System (M-RETS) Organization

The objectives identified in requesting and utilizing this funding has been met. The goal was to establish a formal, multi-jurisdictional organization to: (1) ensure the policy objectives of the participating jurisdictions are addressed through increased tradability of the Renewable Energy Credits (RECs) from M-RETS and to eliminate the possibility that a single jurisdiction will be the sole arbiter of the operation of the system; (2) facilitate the establishment of REC standards including the attributes related to, the creation, trading, and interaction with other trading and tracking systems; and (3) have a centralized and established organization that will be responsible for the contracting and governance responsibilities of a multi-jurisdictional tracking system. The M-RETS Inc. Board ensures that the system remains policy neutral; that the attributes of generation are tracked in a way that allows the system users to easily identify and trade relevant RECs; that the system can add jurisdictions as needed or desired; and that the tracking system operate in such a way to allow for the greatest access possible for those participating in other tracking or trading systems by allowing those systems to negotiate with a single M-RETS entity for the import and export of RECs. M-RETS as an …
Date: June 30, 2010
Creator: Redmond, Maria & O'Connor, Chela Bordas
Object Type: Report
System: The UNT Digital Library
Bacterial Microcompartments (open access)

Bacterial Microcompartments

Bacterialmicrocompartments (BMCs) are organelles composed entirely of protein. They promote specific metabolic processes by encapsulatingand colocalizing enzymes with their substrates and cofactors, by protecting vulnerable enzymes in a defined microenvironment, and bysequestering toxic or volatile intermediates. Prototypes of the BMCsare the carboxysomes of autotrophic bacteria. However, structures of similarpolyhedral shape are being discovered in an ever-increasing number of heterotrophic bacteria, where they participate in the utilization ofspecialty carbon and energy sources.Comparative genomics reveals that the potential for this type of compartmentalization is widespread acrossbacterial phyla and suggests that genetic modules encoding BMCs are frequently laterally transferred among bacteria. The diverse functionsof these BMCs suggest that they contribute to metabolic innovation in bacteria in a broad range of environments.
Date: June 5, 2010
Creator: Kerfeld, Cheryl A.; Heinhorst, Sabine & Cannon, Gordon C.
Object Type: Article
System: The UNT Digital Library
Cultural Resource Investigations for the Remote Handled Low Level Waste Facility at the Idaho National Laboratory (open access)

Cultural Resource Investigations for the Remote Handled Low Level Waste Facility at the Idaho National Laboratory

The U. S. Department of Energy, Idaho Operations Office is considering options for construction of a facility for disposal of Idaho National Laboratory (INL) generated remote-handled low-level waste. Initial screening has resulted in the identification of two recommended alternative locations for this new facility: one near the Advanced Test Reactor (ATR) Complex and one near the Idaho Comprehensive Environmental Response, Compensation, and Liability Act Disposal Facility (ICDF). In April and May of 2010, the INL Cultural Resource Management Office conducted archival searches, intensive archaeological field surveys, and initial coordination with the Shoshone-Bannock Tribes to identify cultural resources that may be adversely affected by new construction within either one of these candidate locations. This investigation showed that construction within the location near the ATR Complex may impact one historic homestead and several historic canals and ditches that are potentially eligible for nomination to the National Register of Historic Places. No resources judged to be of National Register significance were identified in the candidate location near the ICDF. Generalized tribal concerns regarding protection of natural resources were also documented in both locations. This report outlines recommendations for protective measures to help ensure that the impacts of construction on the identified resources are …
Date: June 1, 2010
Creator: Pace, Brenda R.; Gilbert, Hollie; Williams, Julie Braun; Marler, Clayton; Lowrey, Dino & Brizzee, Cameron
Object Type: Report
System: The UNT Digital Library
Carboxysomal carbonic anhydrases: Structure and role in microbial CO2 fixation (open access)

Carboxysomal carbonic anhydrases: Structure and role in microbial CO2 fixation

Cyanobacteria and some chemoautotrophic bacteria are able to grow in environments with limiting CO2 concentrations by employing a CO2-concentrating mechanism (CCM) that allows them to accumulate inorganic carbon in their cytoplasm to concentrations several orders of magnitude higher than that on the outside. The final step of this process takes place in polyhedral protein microcompartments known as carboxysomes, which contain the majority of the CO2-fixing enzyme, RubisCO. The efficiency of CO2 fixation by the sequestered RubisCO is enhanced by co-localization with a specialized carbonic anhydrase that catalyzes dehydration of the cytoplasmic bicarbonate and ensures saturation of RubisCO with its substrate, CO2. There are two genetically distinct carboxysome types that differ in their protein composition and in the carbonic anhydrase(s) they employ. Here we review the existing information concerning the genomics, structure and enzymology of these uniquely adapted carbonic anhydrases, which are of fundamental importance in the global carbon cycle.
Date: June 23, 2010
Creator: Cannon, Gordon C.; Heinhorst, Sabine & Kerfeld, Cheryl A.
Object Type: Article
System: The UNT Digital Library
Magellan at NERSC Progress Report for June 2010 (open access)

Magellan at NERSC Progress Report for June 2010

The Magellan Project was funded by the American Recovery and Reinvestment Act to investigate the applicability of cloud computing for the Department of Energy's Office of Science (DOE-SC). This report covers the progress for the Magellan Project at NERSC since it began in September 2009and focuses on the research aspects of the project.
Date: June 30, 2010
Creator: Broughton, Richard Canon, Lavanya Ramakrishnan, Brent Draney, Jeff
Object Type: Report
System: The UNT Digital Library
On the molecular quasispecies model and the dominance of the fittest genotype (open access)

On the molecular quasispecies model and the dominance of the fittest genotype

None
Date: June 17, 2010
Creator: Kostova, T; Zhou, C & Zemla, A
Object Type: Article
System: The UNT Digital Library
Propagation of Isotopic Bias and Uncertainty to Criticality Safety Analyses of PWR Waste Packages (open access)

Propagation of Isotopic Bias and Uncertainty to Criticality Safety Analyses of PWR Waste Packages

Burnup credit methodology is economically advantageous because significantly higher loading capacity may be achieved for spent nuclear fuel (SNF) casks based on this methodology as compared to the loading capacity based on a fresh fuel assumption. However, the criticality safety analysis for establishing the loading curve based on burnup credit becomes increasingly complex as more parameters accounting for spent fuel isotopic compositions are introduced to the safety analysis. The safety analysis requires validation of both depletion and criticality calculation methods. Validation of a neutronic-depletion code consists of quantifying the bias and the uncertainty associated with the bias in predicted SNF compositions caused by cross-section data uncertainty and by approximations in the calculational method. The validation is based on comparison between radiochemical assay (RCA) data and calculated isotopic concentrations for fuel samples representative of SNF inventory. The criticality analysis methodology for commercial SNF disposal allows burnup credit for 14 actinides and 15 fission product isotopes in SNF compositions. The neutronic-depletion method for disposal criticality analysis employing burnup credit is the two-dimensional (2-D) depletion sequence TRITON (Transport Rigor Implemented with Time-dependent Operation for Neutronic depletion)/NEWT (New ESC-based Weighting Transport code) and the 44GROUPNDF5 crosssection library in the Standardized Computer Analysis for Licensing …
Date: June 1, 2010
Creator: Radulescu, Georgeta
Object Type: Report
System: The UNT Digital Library
Air Dispersion Modeling for Building 3026C/D Demolition (open access)

Air Dispersion Modeling for Building 3026C/D Demolition

This report presents estimates of dispersion coefficients and effective dose for potential air dispersion scenarios of uncontrolled releases from Oak Ridge National Laboratory (ORNL) buildings 3026C, 3026D, and 3140 prior to or during the demolition of the 3026 Complex. The Environmental Protection Agency (EPA) AERMOD system1-6 was used to compute these estimates. AERMOD stands for AERMIC Model, where AERMIC is the American Meteorological Society-EPA Regulatory Model Improvement Committee. Five source locations (three in building 3026D and one each in building 3026C and the filter house 3140) and associated source characteristics were determined with the customer. In addition, the area of study was determined and building footprints and intake locations of air-handling systems were obtained. In addition to the air intakes, receptor sites consisting of ground level locations on four polar grids (50 m, 100 m, 200 m, and 500 m) and two intersecting lines of points (50 m separation), corresponding to sidewalks along Central Avenue and Fifth Street. Three years of meteorological data (2006 2008) were used each consisting of three datasets: 1) National Weather Service data; 2) upper air data for the Knoxville-Oak Ridge area; and 3) local weather data from Tower C (10 m, 30 m and 100 …
Date: June 1, 2010
Creator: Ward, Richard C.; Sjoreen, Andrea L. & Eckerman, Keith F.
Object Type: Report
System: The UNT Digital Library
Streamlined Approach for Environmental Restoration (SAFER) Plan for Corrective Action Unit 539:  Area 25 and Area 26 Railroad Tracks, Nevada Test Site, Nevada, Revision 0 (open access)

Streamlined Approach for Environmental Restoration (SAFER) Plan for Corrective Action Unit 539: Area 25 and Area 26 Railroad Tracks, Nevada Test Site, Nevada, Revision 0

This Streamlined Approach for Environmental Restoration (SAFER) Plan addresses the actions needed to achieve closure for Corrective Action Unit (CAU) 539, Areas 25 and 26 Railroad Tracks, as identified in the Federal Facility Agreement and Consent Order (FFACO). A modification to the FFACOwas approved in May 2010 to transfer the two Railroad Tracks corrective action sites (CASs) from CAU 114 into CAU539. The two CASs are located in Areas 25 and 26 of the Nevada Test Site: • 25-99-21, Area 25 Railroad Tracks • 26-99-05, Area 26 Railroad Tracks This plan provides the methodology for field activities needed to gather the necessary information for closing the two CASs. There is sufficient information and process knowledge from historical documentation and investigations of similar sites regarding the expected nature and extent of potential contaminants to recommend closure of the CAU 539 Railroad Tracks CASs using the SAFER process. Additional information will be obtained by conducting a field investigation before selecting the appropriate corrective action for each CAS. The results of the field investigation should support a defensible recommendation that no further corrective action is necessary. If it is determined that complete clean closure cannot be accomplished during the SAFER, then a hold …
Date: June 1, 2010
Creator: Krauss, Mark
Object Type: Report
System: The UNT Digital Library
S09 Symposium KK, Structure-Property Relationships in Biomineralized and Biomimetic Composites (open access)

S09 Symposium KK, Structure-Property Relationships in Biomineralized and Biomimetic Composites

The technical presentations and discussions at this symposium disseminated and assessed current research and defined future directions in biomaterials research, with a focus on structure-function relationships in biological and biomimetic composites. The invited and contributed talks covered a diverse range of topics from fundamental biology, physics, chemistry, and materials science to potential applications in developing areas such as light-weight composites, multifunctional and smart materials, biomedical engineering, and nanoscaled sensors. The invited speakers were chosen to create a stimulating program with a mixture of established and junior faculty, industrial and academic researchers, and American and international experts in the field. This symposium served as an excellent introduction to the area for younger scientists (graduate students and post-doctoral researchers). Direct interactions between participants also helped to promote potential future collaborations involving multiple disciplines and institutions.
Date: June 7, 2010
Creator: Kisailus, David; Estroff, Lara; Gupta, Himadri S.; Landis, William J. & Zavattieri, Pablo D.
Object Type: Report
System: The UNT Digital Library
Streamlined Approach for Environmental Restoration (SAFER) Plan for Corrective Action Unit 114:  Area 25 EMAD Facility Nevada Test Site, Nevada (open access)

Streamlined Approach for Environmental Restoration (SAFER) Plan for Corrective Action Unit 114: Area 25 EMAD Facility Nevada Test Site, Nevada

This Streamlined Approach for Environmental Restoration (SAFER) Plan addresses the actions needed to achieve closure for Corrective Action Unit (CAU) 114, Area 25 EMAD Facility, identified in the Federal Facility Agreement and Consent Order (FFACO). Corrective Action Unit 114 comprises the following corrective action site (CAS) located in Area 25 of the Nevada Test Site: • 25-41-03, EMAD Facility This plan provides the methodology for field activities needed to gather the necessary information for closing CAS 25-41-03. There is sufficient information and process knowledge from historical documentation and investigations of similar sites regarding the expected nature and extent of potential contaminants to recommend closure of CAU 114 using the SAFER process. Additional information will be obtained by conducting a field investigation before selecting the appropriate corrective action for CAS 25-41-03. It is anticipated that the results of the field investigation and implementation of corrective actions will support a defensible recommendation that no further corrective action is necessary. If it is determined that complete clean closure cannot be accomplished during the SAFER, then a hold point will have been reached and the Nevada Division of Environmental Protection (NDEP) will be consulted to determine whether the remaining contamination will be closed under …
Date: June 1, 2010
Creator: Krauss, Mark
Object Type: Report
System: The UNT Digital Library
Streamlined Approach for (SAFER) Plan for Corrective Action Unit 566:  E-MAD Compound, Nevada Test Site, Nevada, Revision 0 (open access)

Streamlined Approach for (SAFER) Plan for Corrective Action Unit 566: E-MAD Compound, Nevada Test Site, Nevada, Revision 0

This Streamlined Approach for Environmental Restoration (SAFER) Plan addresses the actions needed to achieve closure for Corrective Action Unit (CAU) 566, EMAD Compound, identified in the Federal Facility Agreement and Consent Order (FFACO). Corrective Action Unit 566 comprises the following corrective action site (CAS) located in Area 25 of the Nevada Test Site: • 25-99-20, EMAD Compound This plan provides the methodology for field activities needed to gather the necessary information for closing CAS 25-99-20. There is sufficient information and process knowledge from historical documentation and investigations of similar sites regarding the expected nature and extent of potential contaminants to recommend closure of CAU 566 using the SAFER process. Additional information will be obtained by conducting a field investigation before selecting the appropriate corrective action. It is anticipated that the results of the field investigation and implementation of a corrective action of clean closure will support a defensible recommendation that no further corrective action is necessary. If it is determined that complete clean closure cannot be accomplished during the SAFER, then a hold point will have been reached and the Nevada Division of Environmental Protection (NDEP) will be consulted to determine whether the remaining contamination will be closed under the …
Date: June 1, 2010
Creator: Krauss, Mark
Object Type: Report
System: The UNT Digital Library