The Sivers mechanism for the single-spin asymmetry in unpolarized lepton scattering from a transversely polarized nucleon is driven by the orbital angular momentum carried by its quark and gluon constituents, combined with QCD final-state interactions. Both quark and gluon mechanisms can generate such a single-spin asymmetry, though only the quark mechanism can explain the small single-spin asymmetry measured by the COMPASS collaboration on the deuteron, suggesting the gluon mechanism is small relative to the quark mechanism. We detail empirical studies through which the gluon and quark orbital angular momentum contributions, quark-flavor by quark-flavor, can be elucidated.

Recent beam experiments at BNL's AGS Booster have enabled us to study in more detail the effects of eddy currents on the lattice structure and our control over the betatron tune. The Booster is capable of operating at ramp rates as high as 9 T/sec. At these ramp rates eddy currents in the vacuum chambers significantly alter the fields and gradients seen by the beam as it is accelerated. The Booster was designed with these effects in mind and to help control the field uniformity and linearity in the Booster Dipoles special vacuum chambers were designed with current windings to negate the affect of the induced eddy currents. In this report results from betatron tune measurements and eddy current simulations will be presented. We will then present results from modeling the accelerator using the results of the magnetic field simulations and compare these to the measurements.

The polymerase chain reaction (PCR) stands among the keystone technologies for analysis of biological sequence data. PCR is used to amplify DNA, to generate many copies from as little as a single template. This is essential, for example, in processing forensic DNA samples, pathogen detection in clinical or biothreat surveillance applications, and medical genotyping for diagnosis and treatment of disease. It is used in virtually every laboratory doing molecular, cellular, genetic, ecologic, forensic, or medical research. Despite its ubiquity, we lack the precise predictive capability that would enable detailed optimization of PCR reaction dynamics. In this LDRD, we proposed to develop Virtual PCR (VPCR) software, a computational method to model the kinetic, thermodynamic, and biological processes of PCR reactions. Given a successful completion, these tools will allow us to predict both the sequences and concentrations of all species that are amplified during PCR. The ability to answer the following questions will allow us both to optimize the PCR process and interpret the PCR results: What products are amplified when sequence mixtures are present, containing multiple, closely related targets and multiplexed primers, which may hybridize with sequence mismatches? What are the effects of time, temperature, and DNA concentrations on the concentrations …

Rapid cycling synchrotrons are used to accelerate high-intensity proton beams to energies of tens of GeV for secondary beam production. After primary beam collision with a target, the secondary beam can be collected, cooled, accelerated or decelerated by ancillary synchrotrons for various applications. In this paper, we first present a lattice for the main synchrotron. This lattice has: (a) flexible momentum compaction to avoid transition and to facilitate RF gymnastics (b) long straight sections for low-loss injection, extraction, and high-efficiency collimation (c) dispersion-free straights to avoid longitudinal-transverse coupling, and (d) momentum cleaning at locations of large dispersion with missing dipoles. Then, we present a lattice for a cooler ring for the secondary beam. The momentum compaction across half of this ring is near zero, while for the other half it is normal. Thus, bad mixing is minimized while good mixing is maintained for stochastic beam cooling.

This month's issue has the following articles: (1) The Power of Partnership--Livermore researchers forge strategic collaborations with colleagues from other University of California campuses to further science and better protect the nation; (2) Collaborative Research Prepares Our Next-Generation Scientists and Engineers--Commentary by Laura R. Gilliom; (3) Next-Generation Scientists and Engineers Tap Lab's Resources--University of California Ph.D. candidates work with Livermore scientists and engineers to conduct fundamental research as part of their theses; (4) The Best and the Brightest Come to Livermore--The Lawrence Fellowship Program attracts the most sought-after postdoctoral researchers to the Laboratory; and (5) Faculty on Sabbatical Find a Good Home at Livermore--Faculty members from around the world come to the Laboratory as sabbatical scholars.

FY2006 annual report of research conducted by the Savannah River Ecology Laboratory, a research unit of the University of Georgia operating on the Savannah River Site in Aiken, County, SC.