Virtual PCR (open access)

Virtual PCR

The polymerase chain reaction (PCR) stands among the keystone technologies for analysis of biological sequence data. PCR is used to amplify DNA, to generate many copies from as little as a single template. This is essential, for example, in processing forensic DNA samples, pathogen detection in clinical or biothreat surveillance applications, and medical genotyping for diagnosis and treatment of disease. It is used in virtually every laboratory doing molecular, cellular, genetic, ecologic, forensic, or medical research. Despite its ubiquity, we lack the precise predictive capability that would enable detailed optimization of PCR reaction dynamics. In this LDRD, we proposed to develop Virtual PCR (VPCR) software, a computational method to model the kinetic, thermodynamic, and biological processes of PCR reactions. Given a successful completion, these tools will allow us to predict both the sequences and concentrations of all species that are amplified during PCR. The ability to answer the following questions will allow us both to optimize the PCR process and interpret the PCR results: What products are amplified when sequence mixtures are present, containing multiple, closely related targets and multiplexed primers, which may hybridize with sequence mismatches? What are the effects of time, temperature, and DNA concentrations on the concentrations …
Date: February 23, 2006
Creator: Gardner, S N; Clague, D S; Vandersall, J A; Hon, G & Williams, P L
Object Type: Report
System: The UNT Digital Library
Effect of a Decelerating Grid on Current from an Ion Source (open access)

Effect of a Decelerating Grid on Current from an Ion Source

Abstract: "A theoretical criterion is given for the conditions under which the ions from an ion source may be decelerated by a decelerating grid, following the accelerating grid which extracts ions from the emitter, without causing a reduction in the current supplied by the source."
Date: February 23, 1955
Creator: Bing, George F., 1924-; Gardner, C. S. & Northrop, Theodore G.
Object Type: Report
System: The UNT Digital Library
Observation of off-Hugoniot shocked states with ultrafast time resolution (open access)

Observation of off-Hugoniot shocked states with ultrafast time resolution

We apply ultrafast single shot interferometry to determine the pressure and density of argon shocked from up to 7.8 GPa static initial pressure in a diamond anvil cell. This method enables the observation of thermodynamic states distinct from those observed in either single shock or isothermal compression experiments, and the observation of ultrafast dynamics in shocked materials. We also present a straightforward method for interpreting ultrafast shock wave data which determines the index of refraction at the shock front, and the particle and shock velocities for shock waves in transparent materials. Based on these methods, we observe shocked thermodynamic states between the room temperature isotherm of argon and the shock adiabat of cryogenic argon at final shock pressures up to 28 GPa.
Date: February 23, 2010
Creator: Armstrong, M; Crowhurst, J; Bastea, S & Zaug, J
Object Type: Article
System: The UNT Digital Library
RCRA Assessment Plan for Single-Shell Tank Waste Management Area T at the Hanford Site (open access)

RCRA Assessment Plan for Single-Shell Tank Waste Management Area T at the Hanford Site

A groundwater quality assessment plan was prepared to investigate the rate and extent of aquifer contamination beneath Waste Management Area T at the Hanford Site in Washington State. This plan is an update of a draft plan issued in January 1999, which guided work performed in fiscal year 2000.
Date: February 23, 2001
Creator: Hodges, Floyd N. & Chou, Charissa J.
Object Type: Report
System: The UNT Digital Library
RCRA Assessment Plan for Single-Shell Tank Waste Management Area TX-TY at the Hanford Site (open access)

RCRA Assessment Plan for Single-Shell Tank Waste Management Area TX-TY at the Hanford Site

A groundwater quality assessment plan was prepared to investigate the rate and extent of aquifer contamination beneath Waste Management Area TX-TY on the Hanford Site in Washington State. This plan is an update of a draft plan issued in February 1999, which guided work performed in fiscal year 2000.
Date: February 23, 2001
Creator: Hodges, Floyd N & Chou, Charissa J
Object Type: Report
System: The UNT Digital Library
RCRA Assessment Plan for Single-Shell Tank Waste Management Area TX-TY at the Hanford Site (open access)

RCRA Assessment Plan for Single-Shell Tank Waste Management Area TX-TY at the Hanford Site

A groundwater quality assessment plan was prepared to investigate the rate and extent of aquifer contamination beneath Waste Management Area TX-TY on the Hanford Site in Washington State. This plan is an update of a draft plan issued in February 1999, which guided work performed in fiscal year 2000.
Date: February 23, 2001
Creator: Hodges, Floyd N. & Chou, Charissa J.
Object Type: Report
System: The UNT Digital Library
Dalitz Plot Analysis of B+- --> pi+-pi+-pi-+ Decays (open access)

Dalitz Plot Analysis of B+- --> pi+-pi+-pi-+ Decays

The authors present a Dalitz-plot analysis of charmless B{sup {+-}} decays to the final state {pi}{sup {+-}}{pi}{sup {+-}}{pi}{sup {-+}} using a sample of (465 {+-} 5) x 10{sup 6} B{bar B} pairs collected by the BABAR experiment at {radical}s = 10.58 GeV. They measure the branching fractions {Beta}(B{sup {+-}} {yields} {pi}{sup {+-}}{pi}{sup {+-}}{pi}{sup {-+}}) = (15.2 {+-} 0.6 {+-} 1.2 {+-} 0.4) x 10{sup -6}, {Beta}(B{sup {+-}} {yields} {rho}{sup 0}(770){pi}{sup {+-}}) = (8.1 {+-} 0.7 {+-} 1.2{sub -1.1}{sup +0.4}) x 10{sup -6}, {Beta}(B{sup {+-}} {yields} f{sub 2}(1270){pi}{sup {+-}}) = (1.57 {+-} 0.42 {+-} 0.16{sub -0.19}{sup +0.53}) x 10{sup -6}, and {Beta}(B{sup {+-}} {yields} {pi}{sup {+-}}{pi}{sup {+-}}{pi}{sup {-+}} nonresonant) = (5.3 {+-} 0.7 {+-} 0.6{sub -0.5}{sup +1.1}) x 10{sup -6}, where the uncertainties are statistical, systematic, and model-dependent, respectively. Measurements of branching fractions for the modes B{sup {+-}} {yields} {rho}{sup 0}(1450){pi}{sup {+-}} and B{sup {+-}} {yields} f{sub 0}(1370){pi}{sup {+-}} are also presented. They observe no significant direct CP asymmetries for the above modes, and there is no evidence for the decays B{sup {+-}} {yields} f{sub 0}(980){pi}{sup {+-}}, B{sup {+-}} {yields} {chi}{sub c0}{pi}{sup {+-}}, or B{sup {+-}} {yields} {chi}{sub c2}{pi}{sup {+-}}.
Date: February 23, 2009
Creator: Collaboration, The BABAR & Aubert, B.
Object Type: Article
System: The UNT Digital Library
System design description PFP thermal stabilization (open access)

System design description PFP thermal stabilization

The purpose of this document is to provide a system design description and design basis for the Plutonium Finishing Plant (PFP) Thermal Stabilization project. The sources of material for this project are residues scraped from glovebox floors and materials already stored in vault storage that need further stabilizing. Stabilizing this material will promote long term storage and reduced worker exposure. This document addresses: functional design, equipment, and safety requirements for thermal stabilization of plutonium residues and oxides.
Date: February 23, 1999
Creator: LARKIN, K.A.
Object Type: Report
System: The UNT Digital Library