Copper ions for the 2005 run [1] of the Relativistic Heavy Ion Collider (RHIC) at Brookhaven National Laboratory (BNL) are accelerated in the Tandem, Booster and AGS prior to injection into RHIC. The setup and performance of these accelerators with copper are reviewed in this paper.

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The RHIC 2003 Physics Run [1] required collisions between gold ions and deuterons. The injector necessarily had to deliver adequate quality (transverse and longitudinal emittance) and quantity of both species. For gold this was a continuing evolution from past work [2]. For deuterons it was new territory. For the filling of the RHIC the injector not only had to deliver quality beams but also had to switch between these species quickly. This paper details the collider requirements and our success in meeting these. Some details of the configurations employed are given.

The RHIC spin program requires 2 x 10{sup 11} proton/bunch with 70% polarization. As the injector to RHIC, AGS is the bottleneck for preserving polarization: there is no space for a full snake to overcome numerous depolarizing resonances. An ac dipole and a partial snake have been used to preserve beam polarization in the past few years. Two helical snakes have been built and installed in the AGS. With careful setup of optics at injection and along the ramp, this combination can eliminate all depolarizing resonances encountered during acceleration. This paper presents the setup and preliminary results.

Polarized proton beam has been accelerated and stored at 100 GeV in Relativistic Heavy Ion Collider (RHIC) to study spin effects in the hadronic reactions. The essential equipment includes four Siberian snakes and eight spin rotators in two RHIC rings, a partial snake in the AGS, fast relative polarimeters, and ac dipoles in the AGS and RHIC. This paper summarizes the performance of RHIC as a polarized proton collider and of AGS as the injector to RHIC.

Brookhaven's AGS Booster has been modified to deliver slow extracted beam to a new beam line, the NASA Space Radiation Laboratory (NSRL). This facility was constructed in collaboration with NASA for the purpose of performing radiation effect studies for the NASA space program. The design of the resonant extraction system has been described in [1]. A more detailed description, which includes predictions of the slow extracted beam time structure has been described in [2]. In this report we will present results of the system commissioning and performance.

Residual stress in YBCO films on Ag and Hastelloy C substrates was determined by using 3-D optical interferometry and laser scanning to measure the change in curvature radius before and after film deposition. The residual stress was obtained by appropriate analysis of curvature measurements. Consistent with residual thermal stress calculations based on the thermal expansion coefficient mismatch between the substrates and YBCO film, the measured residual stress in the YBCO film on Hastelloy C substrate was tensile, while it was compressive on the Ag substrate. The stress values measured by the two techniques were generally in good agreement, suggesting that optical interferometry and laser scanning have promise for measuring residual stresses in thin films.

The Lawrence Livermore National Laboratory (LLNL) Chemical & Biological National Security Program (CBNP) provides science, technology, and integrated systems for chemical and biological security. Our approach is to develop and field systems that dramatically improve the nation's capabilities to prevent, prepare for, detect, and respond to terrorist use of chemical or biological weapons.

We developed an analytical solution for solute transport under steady-state, two-dimensional, unsaturated flow and transport conditions for the investigation of high-level radioactive waste disposal. The two-dimensional, unsaturated flow problem is treated using the quasilinear flow method for a system with homogeneous material properties. Dispersion is modeled as isotropic and is proportional to the effective hydraulic conductivity. This leads to a quasilinear form for the transport problem in terms of a scalar potential that is analogous to the Kirchhoff potential for quasilinear flow. The solutions for both flow and transport scalar potentials take the form of Fourier series. The particular solution given here is for two sources of flow, with one source containing a dissolved solute. The solution method may easily be extended, however, for any combination of flow and solute sources under steady-state conditions. The analytical results for multidimensional solute transport problems, which previously could only be solved numerically, also offer an additional way to benchmark numerical solutions. An analytical solution for two-dimensional, steady-state solute transport under unsaturated flow conditions is presented. A specific case with two sources is solved but may be generalized to any combination of sources. The analytical results complement numerical solutions, which were previously required to …

High-energy ion colliders (hadron colliders operating with ions other than protons) are premier research tools for nuclear physics. The collision energy and high luminosity are important design and operations considerations. The experiments also expect flexibility with frequent changes in the collision energy, detector fields, and ion species, including asymmetric collisions. For the creation, acceleration, and storage of bright intense ion beams limits are set by space charge, charge exchange, and intrabeam scattering effects. The latter leads to luminosity lifetimes of only a few hours for intense heavy ions beams. Currently, the Relativistic Heavy Ion Collider (RHIC) at BNL is the only operating high-energy ion collider. Later this decade the Large Hadron Collider (LHC), under construction at CERN, will also run with heavy ions.

Liquid array technology has previously been used to show proof-of-principle of a multiplexed non structural protein serological assay to differentiate foot-and-mouth infected and vaccinated animals. The current multiplexed assay consists of synthetically produced peptide signatures 3A, 3B and 3D and recombinant protein signature 3ABC in combination with four controls. To determine diagnostic specificity of each signature in the multiplex, the assay was evaluated against a naive population (n = 104) and a vaccinated population (n = 94). Subsequently, the multiplexed assay was assessed using a panel of bovine sera generated by the World Reference Laboratory for foot-and-mouth disease in Pirbright, UK. This sera panel has been used to assess the performance of other singleplex ELISA-based non-structural protein antibody assays. The 3ABC signature in the multiplexed assay showed comparative performance to a commercially available non-structural protein 3ABC ELISA (Cedi test{reg_sign}) and additional information pertaining to the relative diagnostic sensitivity of each signature in the multiplex is acquired in one experiment. The encouraging results of the evaluation of the multiplexed assay against a panel of diagnostically relevant samples promotes further assay development and optimization to generate an assay for routine use in foot-and-mouth disease surveillance.

The Supernova/Acceleration Probe (SNAP) is a proposed space-based experiment designed to study the dark energy and alternative explanations of the acceleration of the Universes expansion by performing a series of complementary systematics-controlled astrophysical measurements. We here describe a self-consistent reference mission design that can accomplish this goal with the two leading measurement approaches being the Type Ia supernova Hubble diagram and a wide-area weak gravitational lensing survey. This design has been optimized to first order and is now under study for further modification and optimization. A 2-m three-mirror anastigmat wide-field telescope feeds a focal plane consisting of a 0.7 square-degree imager tiled with equal areas of optical CCDs and near infrared sensors, and a high efficiency low-resolution integral field spectrograph. The instrumentation suite provides simultaneous discovery and light-curve measurements of supernovae and then can target individual objects for detailed spectral characterization. The SNAP mission will discover thousands of Type Ia supernovae out to z = 3 and will obtain high-signal-to-noise calibrated light-curves and spectra for a subset of > 2000 supernovae at redshifts between z = 0.1 and 1.7 in a northern field and in a southern field. A wide-field survey covering one thousand square degrees in both northern and …

Deuteron and gold beams have been accelerated to a collision energy of {radical}s = 200 GeV/u in the Relativistic Heavy Ion Collider (RHIC), providing the first asymmetric-species collisions of this complex. Necessary changes for this mode of operation include new ramping software and asymmetric crossing angle geometries. This paper reviews machine performance, problem encountered and their solutions, and accomplishments during the 16 weeks of ramp-up and operations.

After providing collisions of polarized protons at a beam energy of 100 GeV since 2001, the Relativistic Heavy Ion Collider (RHIC) at BNL had its first opportunity to collide polarized protons at its maximum beam energy of 250 GeV in the 2009 polarized proton operations. Equipped with two full Siberian snakes [1] in each ring, RHIC preserves polarization during acceleration from injection to 100 GeV with precise control of the betatron tunes and vertical orbit distortions. However, the strong intrinsic spin resonances beyond 100 GeV are more than two times stronger than those below 100 GeV, requiring much tighter tolerances on vertical orbit distortions and betatron tunes. With the currently achieved orbit correction and tune control, average polarizations of {approx_equal} 42% at top energy and average polarizations of {approx_equal} 55% at injection energy were achieved. Polarization measurements as a function of beam energy also indicated aU polarization losses occurred around three strong intrinsic resonances at 136 GeV, 199.3 GeV and 220.8 GeV Peak luminosity of 122 x 10{sup 30} cm{sup -2} s{sup -1} was also demonstrated. This paper presents the performance of the first RHIC 250 GeV operation and discusses the depolarization issues encountered during the run.

The Relativistic Heavy Ion Collider provides not only collisions of ions but also collisions of polarized protons. In a circular accelerator, the polarization of polarized proton beam can be partially or fully lost when a spin depolarizing resonance is encountered. To preserve the beam polarization during acceleration, two full Siberian snakes were employed in RHIC. In 2002, polarized proton beams were first accelerated to 100 GeV and collided in RHIC. Beams were brought into collisions with longitudinal polarization at the experiments STAR and PHENIX by using spin rotators. Optimizing polarization transmission efficiency and improving luminosity performance are significant challenges. Currently, the luminosity lifetime in RHIC is limited by the beam-beam effect. The current state of RHIC polarized proton program, including its dedicated physics run in 2005 and efforts to optimize luminosity production in beam-beam limited conditions are reported.

Using data collected by the high energy photoproduction experiment FOCUS at Fermilab we performed a Dalitz plot analysis of the Cabibbo favored decay D{sup +} {yields} K{sup -}{pi}{sup +}{pi}{sup +}. This study uses 53653 Dalitz-plot events with a signal fraction of {approx} 97%, and represents the highest statistics, most complete Dalitz plot analysis for this channel. Results are presented and discussed using two different formalisms. The first is a simple sum of Breit-Wigner functions with freely fitted masses and widths. It is the model traditionally adopted and serves as comparison with the already published analyses. The second uses a K-matrix approach for the dominant S-wave, in which the parameters are fixed by first fitting K{pi} scattering data and continued to threshold by Chiral Perturbation Theory. We show that the Dalitz plot distribution for this decay is consistent with the assumption of two body dominance of the final state interactions and the description of these interactions is in agreement with other data on the K{pi} final state.

Using data from FOCUS (E831) experiment at Fermilab, we present a model independent partial-wave analysis of the K{sup -}{pi}{sup +} S-wave amplitude from the decay D{sup +} {yields} K{sup -}{pi}{sup +}{pi}{sup +}. The S-wave is a generic complex function to be determined directly from the data fit. The P- and D-waves are parameterized by a sum of Breit-Wigner amplitudes. The measurement of the S-wave amplitude covers the whole elastic range of the K{sup -}{pi}{sup +} system.

Using data from FOCUS (E831) experiment at Fermilab, we present a model independent partial-wave analysis of the K{sup -}{pi}{sup +} S-wave amplitude from the decay D{sup +} {yields} K{sup -}{pi}{sup +}{pi}{sup +}. The S-wave is a generic complex function to be determined directly from the data fit. The P- and D-waves are parameterized by a sum of Breit-Wigner amplitudes. The measurement of the S-wave amplitude covers the whole elastic range of the K{sup -}{sup +} system.

To better understand the role of groundwater-level changes on rock-slope deformation and damage, a carbonate rock slope (30 m x 30 m x 15 m) was extensively instrumented for mesoscale hydraulic and mechanical measurements during water-level changes. The slope is naturally drained by a spring that can be artificially closed or opened by a water gate. In this study, a 2-hour slope-dewatering experiment was analyzed. Changes in fluid pressure and deformation were simultaneously monitored, both at discontinuities and in the intact rock, using short-base extensometers and pressure gauges as well as tiltmeters fixed at the slope surface. Field data were analyzed with different coupled hydromechanical (HM) codes (ROCMAS, FLAC{sup 3D}, and UDEC). Field data indicate that in the faults, a 40 kPa pressure fall occurs in 2 minutes and induces a 0.5 to 31 x 10{sup -6} m normal closure. Pressure fall is slower in the bedding-planes, lasting 120 minutes with no normal deformation. No pressure change or deformation is observed in the intact rock. The slope surface displays a complex tilt towards the interior of the slope, with magnitudes ranging from 0.6 to 15 x 10{sup -6} rad. Close agreement with model for both slope surface and internal measurements …

Using data from the FOCUS experiment (FNAL-E831), they study the decay of {Lambda}{sub c}{sup +} baryons into final states contain a {Lambda} hyperon. The branching fractions of {Lambda}{sub c}{sup +} into {Lambda}{pi}{sup +}, {Lambda}{pi}{sup +}{pi}{sup +}{pi}{sup -} and {Lambda}{bar K}{sup 0}K{sup +} relative to that into pK{sup -} {pi}{sup +} are measured to be 0.217 {+-} 0.013 {+-} 0.020, 0.508 {+-} 0.024 {+-} 0.024 and 0.142 {+-} 0.018 {+-} 0.022, respectively. New measurements are also reported. Further, an analysis of the subresonant structure for the {Lambda}{sub c}{sup +} {yields} {Lambda}{pi}{sup +}{pi}{sup +}{pi}{sup -} decay mode is presented.

MannDB was created to meet a need for rapid, comprehensive automated protein sequence analyses to support selection of proteins suitable as targets for driving the development of reagents for pathogen or protein toxin detection. Because a large number of open-source tools were needed, it was necessary to produce a software system to scale the computations for whole-proteome analysis. Thus, we built a fully automated system for executing software tools and for storage, integration, and display of automated protein sequence analysis and annotation data. MannDB is a relational database that organizes data resulting from fully automated, high-throughput protein-sequence analyses using open-source tools. Types of analyses provided include predictions of cleavage, chemical properties, classification, features, functional assignment, post-translational modifications, motifs, antigenicity, and secondary structure. Proteomes (lists of hypothetical and known proteins) are downloaded and parsed from Genbank and then inserted into MannDB, and annotations from SwissProt are downloaded when identifiers are found in the Genbank entry or when identical sequences are identified. Currently 36 open-source tools are run against MannDB protein sequences either on local systems or by means of batch submission to external servers. In addition, BLAST against protein entries in MvirDB, our database of microbial virulence factors, is performed. A …

A search for the production of neutral Higgs bosons {Phi} decaying into {tau}{sup +}{tau}{sup -} final states in p{bar p} collisions at a center-of-mass energy of 1.96 TeV is presented. The data, corresponding to an integrated luminosity of approximately 325 pb{sup -1}, were collected by the D0 experiment at the Fermilab Tevatron Collider. Since no excess compared to the expectation from standard model processes is found, limits on the production cross section times branching ratio are set. The results are combined with those obtained from the D0 search for {Phi}b({bar b}) {yields} b{bar b}b({bar b}) and are interpreted in the minimal supersymmetric standard model.

The authors present a search for supersymmetry in the R-parity violating resonant production and decay of smuons and muon-sneutrinos in the channels {tilde {mu}} {yields} {tilde {chi}}{sub 1}{sup 0} {mu}, {tilde {mu}} {yields} {tilde {chi}}{sub 2,3,4}{sup 0} {mu}, and {tilde {nu}}{sub {mu}} {yields} {tilde {chi}}{sub 1,2}{sup {+-}} {mu}. They analyzed 0.38 fb{sup -1} of integrated luminosity collected between April 2002 and August 2004 with the D0 detector at the Fermilab Tevatron Collider. The observed number of events is in agreement with the standard model expectation, and we calculate 95% C.L. limits on the slepton production cross section times branching fraction to gaugino plus muon, as a function of slepton and gaugino masses. In the framework of minimal supergravity, we set limits on the coupling parameter {lambda}'{sub 211}, extending significantly previous results obtained in Run I of the Tevatron and at the CERN LEP collider.