The Gardner and van Genuchten models of relativepermeability are widely used in analytical and numerical solutions toflow problems. However, the applicab ility of the Gardner model to realproblems is usually limited, because empirical relative permeability datato calibrate the model are not routinely available. In contrast, vanGenuchten parameters can be estimated using more routinely availablematric potential and saturation data. However, the van Genuchten model isnot amenable to analytical solutions. In this paper, we introducegeneralized conversion formulae that reconcile these two models. Ingeneral, we find that the Gardner parameter alpha G is related to the vanGenuchten parameters alpha vG and n by alpha G=alpha vG ~; 1:3 n. Thisconversion rule will allow direct recasting of Gardner-based analyticalsolutions in the van Genuchten parameter space. The validity of theproposed formulae was tested by comparing the predicted relativepermeability of various porous media with measured values.

Praxair, in conjunction with the Los Alamos National Laboratory, is developing a new technology, thermoacoustic heat engines and refrigerators, for liquefaction of natural gas. This is the only technology capable of producing refrigeration power at cryogenic temperatures with no moving parts. A prototype, with a projected natural gas liquefaction capacity of 500 gallons/day, has been built and tested. The power source is a natural gas burner. Systems will be developed with liquefaction capacities up to 10,000 to 20,000 gallons per day. The technology, the development project, accomplishments and applications are discussed. In February 2001 Praxair, Inc. purchased the acoustic heat engine and refrigeration development program from Chart Industries. Chart (formerly Cryenco, which Chart purchased in 1997) and Los Alamos had been working on the technology development program since 1994. The purchase included assets and intellectual property rights for thermoacoustically driven orifice pulse tube refrigerators (TADOPTR), a new and revolutionary Thermoacoustic Stirling Heat Engine (TASHE) technology, aspects of Orifice Pulse Tube Refrigeration (OPTR) and linear motor compressors as OPTR drivers. Praxair, in cooperation with Los Alamos National Laboratory (LANL), the licensor of the TADOPTR and TASHE patents, is continuing the development of TASHE-OPTR natural gas powered, natural gas liquefiers. The liquefaction …

We consider the electric dipole form factor, F{sub 3}(q{sup 2}), as well as the Dirac and Pauli form factors, F{sub 1}(q{sup 2}) and F{sub 2}(q{sup 2}), of the nucleon in the light-front formalism. We derive an exact formula for F{sub 3}(q{sup 2}) to complement those known for F{sub 1}(q{sup 2}) and F{sub 2}(q{sup 2}). We derive the light-front representation of the discrete symmetry transformations and show that time-reversal- and parity-odd effects are captured by phases in the light-front wave functions. We thus determine that the contributions to F{sub 2}(q{sup 2}) and F{sub 3}(q{sup 2}), Fock-state by Fock-state, are related, independent of the fundamental mechanism through which CP violation is generated. Our relation is not specific to the nucleon, but, rather, is true of spin-1/2 systems in general, be they lepton or baryon. The empirical values of the anomalous magnetic moments, in concert with empirical bounds on the associated electric dipole moments, can better constrain theories of CP violation. In particular, we find that the neutron and proton electric dipole moments echo the isospin structure of the anomalous magnetic moments, {kappa}{sup n} {approx} -{kappa}{sup p}.

Over the laqt decade, network practitioners have focused on monitoring, measuring, and characterizing traffic in the network to gain insight into building critical network components (from the protocol stack to routers and switches to network interface cards). Recent research shows that additional insight can be obtained by monitoring traffic at the application level (Le,, before application-sent traffic is modulated by the protocol stack) rather than in the network (i-e., after it is modulated by the protocol stack). Consequently, this paper describes a Monitor for Application-Generated Network Traffic (MAGNeT) that captures traffic generated by the application rather than traffic in the network. MAGNeT consists of application programs as well as modifications to the standard Linux kernel. Together, these tools provide the capability of monitoring an application's network behavior and protocol state information in production systems. The use of MAGNeT will enable the research community to construct a library of real traces of application-generated traffic from which researchers can more realistically test network protocol designs and theory. MAGNeT can also be used to verify the correct operation of protocol enhancements and to troubleshoot and tune protocol implementations.

The current trend in constructing high-performance computing systems is to connect a large number of machines via a fast interconnect or a large-scale network such as the Internet, This approach relies on the performance of the interconnect (or Internet) to enable Past, large-scale distributed computing. A detailed understanding of the communication traffic is required in order to optimize the operation of entire system. Network researchers traditionally monitor traffic in the network to gain the insight necessary to optimize network operations. Recent work suggests additional insight can be obtained by also monitoring trafflc at the application level. The Monitor for Application-Generated Network Traffic toolkit (MAGNeT) we describe here monitors application trallic patterns In production systems, thus enabling more highly optimized networks and interconnects for the next generation of high performance computing system. Keywords- monitor, measurement, network protocol, traffic characterization, TCP, MAGNet, traces, application-generated traffic, virtual supercomputing, network-aware applications, computational giids, high-perfomiance computing.

We built a system to guide decisions regarding the amount of genomic sequencing required to develop diagnostic DNA signatures, which are short sequences that are sufficient to uniquely identify a viral species. We used our existing DNA diagnostic signature prediction pipeline, which selects regions of a target species genome that are conserved among strains of the target (for reliability, to prevent false negatives) and unique relative to other species (for specificity, to avoid false positives). We performed simulations, based on existing sequence data, to assess the number of genome sequences of a target species and of close phylogenetic relatives (''near neighbors'') that are required to predict diagnostic signature regions that are conserved among strains of the target species and unique relative to other bacterial and viral species. For DNA viruses such as variola (smallpox), three target genomes provide sufficient guidance for selecting species-wide signatures. Three near neighbor genomes are critical for species specificity. In contrast, most RNA viruses require four target genomes and no near neighbor genomes, since lack of conservation among strains is more limiting than uniqueness. SARS and Ebola Zaire are exceptional, as additional target genomes currently do not improve predictions, but near neighbor sequences are urgently needed. …

ImageTool is a software package developed at Bechtel Nevada, Los Alamos Operations. This team has developed a set of analysis tools, in the form of image processing software used to evaluate camera calibration data. Performance measures are used to identify capabilities and limitations of a camera system, while establishing a means for comparing systems. The camera evaluations are designed to provide system performance, camera comparison and system modeling information. This program is used to evaluate digital camera images. ImageTool provides basic image restoration and analysis features along with a special set of camera evaluation tools which are used to standardize camera system characterizations. This process is started with the acquisition of a well-defined set of calibration images. Image processing algorithms provide a consistent means of evaluating the camera calibration data. Performance measures in the areas of sensitivity, noise, and resolution are used as a basis for comparing camera systems and evaluating experimental system performance. Camera systems begin with a charge-coupled device (CCD) camera and optical relay system and may incorporate image intensifiers, electro-static image tubes, or electron bombarded charge-coupled devices (EBCCDs). Electro-optical components provide fast shuttering and/or optical gain to camera systems. Camera types evaluated include gated intensified cameras and …

The Eolus ASCI project includes parallel, 3-D transport simulation for various nuclear applications. The codes developed within this project provide neutral and charged particle transport, detailed interaction physics, numerous source and tally capabilities, and general geometry packages. One such code is MCNPW which is a general purpose, 3-dimensional, time-dependent, continuous-energy Monte Carlo fully-coupled N-Particle transport code. Significant advances are also being made in the areas of modern software engineering and parallel computing. These advances are described in detail.

Both for offline searches through large data archives and for onboard computation at the sensor head, there is a growing need for ever-more rapid processing of remote sensing data. For many algorithms of use in remote sensing, the bulk of the processing takes place in an 'inner loop' with a large number of simple operations. For these algorithms, dramatic speedups can often be obtained with specialized hardware. The difficulty and expense of digital design continues to limit applicability of this approach, but the development of new design tools is making this approach more feasible, and some notable successes have been reported. On the other hand, it is often the case that processing can also be accelerated by adopting a more sophisticated algorithm design. Unfortunately, a more sophisticated algorithm is much harder to implement in hardware, so these approaches are often at odds with each other. With careful planning, however, it is sometimes possible to combine software and hardware design in such a way that each complements the other, and the final implementation achieves speedup that would not have been possible with a hardware-only or a software-only solution. We will in particular discuss the co-design of software and hardware to achieve …

We describe the design and operation of a detector system for measuring all-photon decays of mesons photoproduced in a tagged photon beam with energies between 4.3 and 5.4 GeV and a flux of 5×107 tagged photons per second. Photons from meson decays were detected with a lead-glass calorimeter with an energy resolution of 11% at 1 GeV. Various veto and trigger components were also present. Final states with as many as six photons were successfully detected and reconstructed.

The China Spallation Neutron Source (CSNS) is an accelerator-based high-power project currently in preparation under the direction of the Chinese Academy of Sciences (CAS). The complex is based on an H- linear accelerator, a rapid cycling proton synchrotron accelerating the beam to 1.6 GeV, a solid tungsten target station, and five initial instruments for spallation neutron applications. The facility will operate at 25 Hz repetition rate with a phase-I beam power of about 120 kW. The major challenge is to build a robust and reliable user's facility with upgrade potential at a fractional of ''world standard'' cost.

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Implantation of dopant ions in SiC has evolved according to the assumption that the best electrical results (i.e., carrier concentrations and mobility) is achieved by using the highest possible processing temperature. This includes implantation at > 600 C followed by furnace annealing at temperatures as high as 1,750 C. Despite such aggressive and extreme processing, implantation suffers because of poor dopant activation, typically ranging between < 2%--50% with p-type dopants represented in the lower portion of this range and n-types in the upper. Additionally, high-temperature processing can led to several problems including changes in the stoichiometry and topography of the surface, as well as degradation of the electrical properties of devices. A novel approach for increasing activation of implanted dopants in SiC and lowering the activation temperature will be discussed. This approach utilizes the manipulation of the ion-induced damage to enhance activation of implanted dopants. It will be shown that nearly amorphous layers containing a small amount of residual crystallinity can be recrystallized at temperatures below 900 C with little residual damage. It will be shown that recrystallization traps a high fraction of the implanted dopant residing within the amorphous phase (prior to annealing) onto substitutional sites within the SiC …

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We use Time-of-Flight Secondary Ion Mass Spectrometry (TOF-SIMS) to image and classify individual cells based on their characteristic mass spectra. Using statistical data reduction on the large data sets generated during TOF-SIMS analysis, similar biological materials can be differentiated based on a combination of small changes in protein expression, metabolic activity and cell structure. We apply this powerful technique to image and differentiate three carcinoma-derived human breast cancer cell lines (MCF-7, T47D and MDA-MB-231). In homogenized cells, we show the ability to differentiate the cell types as well as cellular compartments (cytosol, nuclear and membrane). These studies illustrate the capacity of TOF-SIMS to characterize individual cells by chemical composition, which could ultimately be applied to detect and identify single aberrant cells within a normal cell population. Ultimately, we anticipate characterizing rare chemical changes that may provide clues to single cell progression within carcinogenic and metastatic pathways.

'Static' structure functions are the probabilistic distributions computed from the square of the light-front wavefunctions of the target hadron. In contrast, the 'dynamic' structure functions measured in deep inelastic lepton-hadron scattering include the effects of rescattering associated with the Wilson line. Initial- and final-state rescattering, neglected in the parton model, can have a profound effect in QCD hard-scattering reactions, producing single-spin asymmetries, diffractive deep inelastic scattering, diffractive hard hadronic reactions, the breakdown of the Lam-Tung relation in Drell-Yan reactions, nuclear shadowing, and non-universal nuclear antishadowing|novel leading-twist physics not incorporated in the light-front wavefunctions of the target computed in isolation. I also review how 'direct' higher-twist processes--where a proton is produced in the hard subprocess itself--can explain the anomalous proton-to-pion ratio seen in high centrality heavy ion collisions.

The weight window variance reduction method in the general-purpose Monte Carlo N-Particle radiation transport code MCNPTM has recently been rewritten. In particular, it is now possible to generate weight window importance functions on a superimposed mesh, eliminating the need to subdivide geometries for variance reduction purposes. Our assessment addresses the following questions: (1) Does the new MCNP4C treatment utilize weight windows as well as the former MCNP4B treatment? (2) Does the new MCNP4C weight window generator generate importance functions as well as MCNP4B? (3) How do superimposed mesh weight windows compare to cell-based weight windows? (4) What are the shortcomings of the new MCNP4C weight window generator? Our assessment was carried out with five neutron and photon shielding problems chosen for their demanding variance reduction requirements. The problems were an oil well logging problem, the Oak Ridge fusion shielding benchmark problem, a photon skyshine problem, an air-over-ground problem, and a sample problem for variance reduction.

A study was performed at the University of Florida to measure ground penetrating radar(GPR) performance for detecting forensic burials. In controlled scenarios, 24 burials were constructed with pig cadavers. Two soils were utilized to represent two of the most common soil orders in Florida: an Entisol and an Ultisol. Graves were monitored on a monthly basis for time periods up to 21 months with grid data acquired with pulsed and swept-frequency GPR systems incorporating several different frequency antennas. A small subset of the graves was excavated to assess decomposition and relate to the GPR images during the test. The grave anomalies in the GPR depth profiles became less distinctive over time due to body decomposition and settling of the disturbed soil (backfill) as it compacted. Soil type was a major factor. Grave anomalies became more difficult to recognize over time for deep targets that were within clay. Forensic targets that were in sandy soil were recognized for the duration of this study. Time elapsed imagery will be presented to elucidate the changes, or lack thereof, of grave anomalies over the duration of this study. Further analysis was performed using Synthetic Aperture Radar (SAR) reconstruction of images in 2-D and 3-D.

This paper investigates ballasting and remineralization controls of carbon sedimentation in the twilight zone (100-1000 m) of the Southern Ocean. Size-fractionated (<1 {micro}m, 1-51 {micro}m, >51 {micro}m) suspended particulate matter was collected by large volume in-situ filtration from the upper 1000 m in the Subantarctic (55 S, 172 W) and Antarctic (66 S, 172 W) zones of the Southern Ocean during the Southern Ocean Iron Experiment (SOFeX) in January-February 2002. Particles were analyzed for major chemical constituents (POC, P, biogenic Si, CaCO3), and digital and SEM image analyses of particles were used to aid in the interpretation of the chemical profiles. Twilight zone waters at 66 S in the Antarctic had a steeper decrease in POC with depth than at 55 S in the Subantarctic, with lower POC concentrations in all size fractions at 66 S than at 55 S, despite up to an order of magnitude higher POC in surface waters at 66 S. The decay length scale of >51 {micro}m POC was significantly shorter in the upper twilight zone at 66 S ({delta}{sub e}=26 m) compared to 55 S ({delta}{sub e}=81 m). Particles in the carbonate-producing 55 S did not have higher excess densities than particles from the …

Experimental measurements and flow visualization of synthetic jets and similar continuous jets are described. The dimensionless stroke length necessary to form a 2-D synthetic jet is between 5 and 10, with wider-nozzle jets consistently requiring a smaller value. Synthetic jets are wider, slower and have more momentum than similar continuous jets. Synthetic jets are generated using four nozzle widths that vary by a factor of four, and the driving frequency is varied over an order of magnitude. The resultant jets are in the range 13.5 < L{sub o}/h < 80.8 and 695 < Re{sub Uo} < 14700. In spite of the large range of stroke lengths, the near-field behavior of the synthetic jets scales with L{sub o}/h.

Modern comparative genomics has been established, in part, by the sequencing and annotation of a broad range of microbial species. To gain further insights, new sequencing efforts are now dealing with the variety of strains or isolates that gives a species definition and range; however, this number vastly outstrips our ability to sequence them. Given the availability of a large number of microbial species, new whole genome approaches must be developed to fully leverage this information at the level of strain diversity that maximize discovery. Here, we describe how optical mapping, a single-molecule system, was used to identify and annotate chromosomal alterations between bacterial strains represented by several species. Since whole-genome optical maps are ordered restriction maps, sequenced strains of Shigella flexneri serotype 2a (2457T and 301), Yersinia pestis (CO 92 and KIM), and Escherichia coli were aligned as maps to identify regions of homology and to further characterize them as possible insertions, deletions, inversions, or translocations. Importantly, an unsequenced Shigella flexneri strain (serotype Y strain AMC[328Y]) was optically mapped and aligned with two sequenced ones to reveal one novel locus implicated in serotype conversion and several other loci containing insertion sequence elements or phage-related gene insertions. Our results suggest …

Photosynthesis and respiration are the largest fluxes into and out of the biosphere (Molles 1999). Consequently, small changes in these fluxes can potentially produce large changes in the storage of carbon in the biosphere. Terrestrial carbon fluxes account for more than half of the carbon transferred between the atmosphere and the earth's surface (about 120 GigaTons/year), and current stores of carbon in terrestrial ecosystem are estimated at 2060 GigaTons. Increasing attention is being focused on the role of managing and sequestering carbon in the terrestrial biosphere as a means for addressing global climate change (IGBP, 1998; U.S. Department of Energy, 1999). Terrestrial ecosystems are widely recognized as a major biological scrubber for atmosphereic CO{sub 2} and their ability to finction as such can be increased significantly over the next 25 years through careful manipulation. The potential for terrestrial carbon gains has been the subject of much attention (Dixon et al., 1994; Masera et al. 1997; Cao and Woodward, 1998; DeLucia et al. 1999). In contrast to other strategies for reducing net carbon emissions, terrestrial sequestration has the potential for rapid implementation. Strategies that focus on soil carbon are likely to be effective because in addition to being a storage pool …

I'd like to welcome you to the Agent 2004 conference. As most of you are aware, this conference is the fifth in a series of meetings that began in 1999. A conference followed the next year in 2000. The 2001 conference was skipped because of some conflicts with other conferences, and the conferences have proceeded annually since then. We have the proceedings of the previous conferences available here on CDs. One CD has the proceedings from 1999, 2000, and 2002; the other contains last year's proceedings. The purpose of these conferences is to advance the state of the computational social sciences and to integrate the social sciences with the decision sciences and something that is traditionally known as the management sciences. Those of you in the operations/research area are familiar with the traditional school of modeling simulation that emerged from that scientific area. This conference will bring together a different group of people to talk about the topic of agent-based theories and simulations. This fifth agent conference is one of a group of conferences held annually around the country. Most of you are probably aware of the CASOS Conference held at Carnegie Mellon University, usually in July. UCLA holds the …

The order parameter of the recently-discovered ferric arsenide family of superconductors remains uncertain. Some early experiments on polycrystalline samples suggested line nodes in the order parameter, however later experiments on single crystals have strongly supported fully-gapped superconductivity. An absence of nodes does not rule out unconventional order: {pi} phase shifts between the separate Fermi sheets and time-reversal symmetry-breaking components in the order parameter remain possibilities. One test for unconventional order is scanning magnetic microscopy on well-coupled polycrystalline samples: d- or p-wave order would result in orbital frustration, leading to spontaneous currents and magnetization in the superconducting state. We have performed scanning SQUID microscopy on SmFeAsO{sub 0.85} and NdFeAsO{sub 0.94}F{sub 0.06}, and in neither material do we find spontaneous orbital currents, ruling out p- or d-wave order.