We developed an analytical solution for solute transport under steady-state, two-dimensional, unsaturated flow and transport conditions for the investigation of high-level radioactive waste disposal. The two-dimensional, unsaturated flow problem is treated using the quasilinear flow method for a system with homogeneous material properties. Dispersion is modeled as isotropic and is proportional to the effective hydraulic conductivity. This leads to a quasilinear form for the transport problem in terms of a scalar potential that is analogous to the Kirchhoff potential for quasilinear flow. The solutions for both flow and transport scalar potentials take the form of Fourier series. The particular solution given here is for two sources of flow, with one source containing a dissolved solute. The solution method may easily be extended, however, for any combination of flow and solute sources under steady-state conditions. The analytical results for multidimensional solute transport problems, which previously could only be solved numerically, also offer an additional way to benchmark numerical solutions. An analytical solution for two-dimensional, steady-state solute transport under unsaturated flow conditions is presented. A specific case with two sources is solved but may be generalized to any combination of sources. The analytical results complement numerical solutions, which were previously required to …

A new cryostat cooled by a closed-cycle Cryomech GB-37 cryocooler for superconductor measurements at temperatures down to 20 K is described. The sample is conductively coupled to the cold stage so as to minimize vibration and thermal stresses. AC losses have been measured calorimetrically in several HTSC coils that have been wound to simulate sub-scale transformer winding pairs. Stable temperatures down to 20 K were reached on these coils, allowing measurements at practical levels of ac current and I{sub c}. By using short ac current pulses, losses on individual turns could be resolved. Results are reported mainly to showcase the apparatus, measurement procedure and analytical approach.

The versatile dot matrix printer of the DECwriter II was modified to enable printing of symbol characters., e.g., Greek letters and other symbol for mathematical expressions and units of measurement. This development involved the replacement of the read-only memory (ROM) units with erasable-programmable read-only memory (EPROM) units.

Numerous cosmological hydrodynamic studies have addressed the formation of galaxies. Here we choose to study the first stages of galaxy formation, including non-equilibrium atomic primordial gas cooling, gravity and hydrodynamics. Using initial conditions appropriate for the concordance cosmological model of structure formation, we perform two adaptive mesh refinement simulations of {approx} 10{sup 8} M{sub {circle_dot}} galaxies at high redshift. The calculations resolve the Jeans length at all times with more than 16 cells and capture over 14 orders of magnitude in length scales. In both cases, the dense, 10{sup 5} solar mass, one parsec central regions are found to contract rapidly and have turbulent Mach numbers up to 4. Despite the ever decreasing Jeans length of the isothermal gas, we only find one site of fragmentation during the collapse. However, rotational secular bar instabilities transport angular momentum outwards in the central parsec as the gas continues to collapse and lead to multiple nested unstable fragments with decreasing masses down to sub-Jupiter mass scales. Although these numerical experiments neglect star formation and feedback, they clearly highlight the physics of turbulence in gravitationally collapsing gas. The angular momentum segregation seen in our calculations plays an important role in theories that form supermassive …

The authors present the results of narrow-band and broad-band imaging with the Very Large Telescope of the field surrounding the radio galaxy TN J0924-2201 at z = 5.2. 14 candidate Ly{alpha} emitters with an observed equivalent width of at least 124 {angstrom} were detected. Spectroscopy of 8 of these objects revealed 6 having redshifts similar to that of the radio galaxy. The density of emitters near the radio galaxy is a factor 3-4 higher than in the field, and comparable to the density of Ly{alpha} emitters in the protocluster 1338-1942 at z = 4.1. The Ly{alpha} emitters near TN J0924-2201 could therefore be part of a structure that will evolve into a 10{sup 15} M{sub {circle_dot}} cluster. These observations confirm that substantial clustering of Ly{alpha} emitters occur at z > 5 and strengthen the idea that radio galaxies in the early Universe pinpoint regions of high density.

To better understand the role of groundwater-level changes on rock-slope deformation and damage, a carbonate rock slope (30 m x 30 m x 15 m) was extensively instrumented for mesoscale hydraulic and mechanical measurements during water-level changes. The slope is naturally drained by a spring that can be artificially closed or opened by a water gate. In this study, a 2-hour slope-dewatering experiment was analyzed. Changes in fluid pressure and deformation were simultaneously monitored, both at discontinuities and in the intact rock, using short-base extensometers and pressure gauges as well as tiltmeters fixed at the slope surface. Field data were analyzed with different coupled hydromechanical (HM) codes (ROCMAS, FLAC{sup 3D}, and UDEC). Field data indicate that in the faults, a 40 kPa pressure fall occurs in 2 minutes and induces a 0.5 to 31 x 10{sup -6} m normal closure. Pressure fall is slower in the bedding-planes, lasting 120 minutes with no normal deformation. No pressure change or deformation is observed in the intact rock. The slope surface displays a complex tilt towards the interior of the slope, with magnitudes ranging from 0.6 to 15 x 10{sup -6} rad. Close agreement with model for both slope surface and internal measurements …

A unique set of high-quality downhole shallow subsurface well log data combined with industry standard 3D seismic data from the Alaminos Canyon area has enabled the first detailed description of a concentrated gas hydrate accumulation within sand in the Gulf of Mexico. The gas hydrate occurs within very fine grained, immature volcaniclastic sands of the Oligocene Frio sand. Analysis of well data acquired from the Alaminos Canyon Block 818 No.1 ('Tigershark') well shows a total gas hydrate occurrence 13 m thick, with inferred gas hydrate saturation as high as 80% of sediment pore space. Average porosity in the reservoir is estimated from log data at approximately 42%. Permeability in the absence of gas hydrates, as revealed from the analysis of core samples retrieved from the well, ranges from 600 to 1500 millidarcies. The 3-D seismic data reveals a strong reflector consistent with significant increase in acoustic velocities that correlates with the top of the gas-hydrate-bearing sand. This reflector extends across an area of approximately 0.8 km{sup 2} and delineates the minimal probable extent of the gas hydrate accumulation. The base of the inferred gas-hydrate zone also correlates well with a very strong seismic reflector that indicates transition into units of …

Radiation hydrodynamics simulations were used to study the effect of plastic ablators in laser-driven shock experiments. The sensitivity to composition and equation of state was found to be 5-10% in ablation pressure. As was found for metals, a laser pulse of constant irradiance gave a pressure history which decreased by several percent per nanosecond. The pressure history could be made more constant by adjusting the irradiance history. The impedance mismatch with the sample gave an increase o(100%) in the pressure transmitted into the sample, for a reduction of several tens of percent in the duration of the peak load applied to the sample, and structured the release history by adding a release step to a pressure close to the ablation pressure. Algebraic relations were found between the laser pulse duration, the ablator thickness, and the duration of the peak pressure applied to the sample, involving quantities calculated from the equations of state of the ablator and sample using shock dynamics.

Mutations in distant regulatory elements can negatively impact human development and health, yet due to the difficulty of detecting these critical sequences we predominantly focus on coding sequences for diagnostic purposes. We have undertaken a comparative sequence-based approach to characterize a large noncoding region deleted in patients affected by Van Buchem disease (VB), a severe sclerosing bone dysplasia. Using BAC recombination and transgenesis we characterized the expression of human sclerostin (sost) from normal (hSOSTwt) or Van Buchem(hSOSTvb D) alleles. Only the hSOSTwt allele faithfully expressed high levels of human sost in the adult bone and impacted bone metabolism, consistent with the model that the VB noncoding deletion removes a sost specific regulatory element. By exploiting cross-species sequence comparisons with in vitro and in vivo enhancer assays we were able to identify a candidate enhancer element that drives human sost expression in osteoblast-like cell lines in vitro and in the skeletal anlage of the E14.5 mouse embryo, and discovered a novel function for sclerostin during limb development. Our approach represents a framework for characterizing distant regulatory elements associated with abnormal human phenotypes.

Preferential flow and solute transport are common processes in the unsaturated soil, in which distributions of soil water content and solute concentrations are often characterized as fractal patterns. An active region model (ARM) was recently proposed to describe the preferential flow and transport patterns. In this study, ARM governing equations were derived to model the preferential soil water flow and solute transport processes. To evaluate the ARM equations, dye infiltration experiments were conducted, in which distributions of soil water content and Cl{sup -} concentration were measured. Predicted results using the ARM and the mobile-immobile region model (MIM) were compared with the measured distributions of soil water content and Cl{sup -} concentration. Although both the ARM and the MIM are two-region models, they are fundamental different in terms of treatments of the flow region. The models were evaluated based on the modeling efficiency (ME). The MIM provided relatively poor prediction results of the preferential flow and transport with negative ME values or positive ME values less than 0.4. On the contrary, predicted distributions of soil water content and Cl- concentration using the ARM agreed reasonably well with the experimental data with ME values higher than 0.8. The results indicated that the …

This article discusses octahedral [TpRu(PMe3)2OR]n+ Complexes (Tp = hydridotris(pyrazolyl)borate.

Where Martian rocks have been exposed to liquid water, chemistry versus depth profiles could elucidate both Martian climate history and potential for life. The persistence of primary minerals in weathered profiles constrains the exposure time to liquid water: on Earth, mineral persistence times range from {approx}10 ka (olivine) to {approx}250 ka (glass) to {approx}1Ma (pyroxene) to {approx}5Ma (plagioclase). Such persistence times suggest mineral persistence minima on Mars. However, Martian solutions may have been more acidic than on Earth. Relative mineral weathering rates observed for basalt in Svalbard (Norway) and Costa Rica demonstrate that laboratory pH trends can be used to estimate exposure to liquid water both qualitatively (mineral absence or presence) and quantitatively (using reactive transport models). Qualitatively, if the Martian solution pH > {approx}2, glass should persist longer than olivine; therefore, persistence of glass may be a pH-indicator. With evidence for the pH of weathering, the reactive transport code CrunchFlow can quantitatively calculate the minimum duration of exposure to liquid water consistent with a chemical profile. For the profile measured on the surface of Humphrey in Gusev Crater, the minimum exposure time is 22 ka. If correct, this estimate is consistent with short-term, episodic alteration accompanied by ongoing surface …

Typical Grid computing scenarios involve many distributed hardware and software components. The more components that are involved, the more likely it is that one of them may fail. In order for Grid computing to succeed, there must be a simple mechanism to determine which component failed and why. Instrumentation of all Grid applications and middleware is an important part of the solution to this problem. However, it must be possible to control and adapt the amount of instrumentation data produced in order to not be flooded by this data. In this paper we describe a scalable, high-performance instrumentation activation mechanism that addresses this problem.

Weathering of rocks as a result of exposure to water and the atmosphere can cause significant changes in their chemistry and porosity. In low-porosity rocks, such as basalts, changes in porosity, resulting from chemical weathering, are likely to modify the rock's effective diffusivity and permeability, affecting the rate of solute transport and thus potentially the rate of overall weathering to the extent that transport is the rate limiting step. Changes in total porosity as a result of mineral dissolution and precipitation have typically been used to calculate effective diffusion coefficients through Archie's law for reactive transport simulations of chemical weathering, but this approach fails to account for unconnected porosity that does not contribute to transport. In this study, we combine synchrotron X-ray microcomputed tomography ({mu}CT) and laboratory and numerical diffusion experiments to examine changes in both total and effective porosity and effective diffusion coefficients across a weathering interface in a weathered basalt clast from Costa Rica. The {mu}CT data indicate that below a critical value of {approx}9%, the porosity is largely unconnected in the basalt clast. The {mu}CT data were further used to construct a numerical pore network model to determine upscaled, effective diffusivities as a function of total porosity …

Memory is usually associated with higher organisms rather than bacteria. However, evidence is mounting that many regulatory networks within bacteria are capable of complex dynamics and multi-stable behaviors that have been linked to memory in other systems. Moreover, it is recognized that bacteria that have experienced different environmental histories may respond differently to current conditions. These"memory" effects may be more than incidental to the regulatory mechanisms controlling acclimation or to the status of the metabolic stores. Rather, they may be regulated by the cell and confer fitness to the organism in the evolutionary game it participates in. Here, we propose that history-dependent behavior is a potentially important manifestation of memory, worth classifying and quantifying. To this end, we develop an information-theory based conceptual framework for measuring both the persistence of memory in microbes and the amount of information about the past encoded in history-dependent dynamics. This method produces a phenomenologicalmeasure of cellular memory without regard to the specific cellular mechanisms encoding it. We then apply this framework to a strain of Bacillus subtilis engineered to report on commitment to sporulation and degradative enzyme (AprE) synthesisand estimate the capacity of these systems and growth dynamics to"remember" 10 distinct cell histories prior …

Memory is usually associated with higher organisms rather than bacteria. However, evidence is mounting that many regulatory networks within bacteria are capable of complex dynamics and multi-stable behaviors that have been linked to memory in other systems. Moreover, it is recognized that bacteria that have experienced different environmental histories may respond differently to current conditions. These"memory" effects may be more than incidental to the regulatory mechanisms controlling acclimation or to the status of the metabolic stores. Rather, they may be regulated by the cell and confer fitness to the organism in the evolutionary game it participates in. Here, we propose that history-dependent behavior is a potentially important manifestation of memory, worth classifying and quantifying. To this end, we develop an information-theory based conceptual framework for measuring both the persistence of memory in microbes and the amount of information about the past encoded in history-dependent dynamics. This method produces a phenomenological measure of cellular memory without regard to the specific cellular mechanisms encoding it. We then apply this framework to a strain of Bacillus subtilis engineered to report on commitment to sporulation and degradative enzyme (AprE) synthesis and estimate the capacity of these systems and growth dynamics to 'remember' 10 distinct …

This guidebook will be distributed to 200 geologists for the Carolina Geological Society Meeting and the onsite field trip in November.

This guidebook will be distributed to 200 geologists for the Carolina Geological Society Meeting and the onsite field trip in November.

Proceedings of the SECA Annual Workshop and Core Technology Meeting.