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Bioinformatics for Microbial Genotyping of Equine Encephalitis Viruses, Orthopox Viruses, and Hantaviruses (open access)

Bioinformatics for Microbial Genotyping of Equine Encephalitis Viruses, Orthopox Viruses, and Hantaviruses

None
Date: August 8, 2011
Creator: Gardner, S N & Jaing, C J
System: The UNT Digital Library
Detection of adventitious viruses from biologicals using a broad spectrum Microbial Detection Array (open access)

Detection of adventitious viruses from biologicals using a broad spectrum Microbial Detection Array

None
Date: May 24, 2011
Creator: Jaing, C; Gardner, S; McLoughlin, K; Thissen, J & Slezak, T
System: The UNT Digital Library
Crystal fields, disorder, and antiferromagnetic short-range order in (Yb{sub 0.24}Sn{sub 0.76})Ru (open access)

Crystal fields, disorder, and antiferromagnetic short-range order in (Yb{sub 0.24}Sn{sub 0.76})Ru

We report extensive measurements on a new compound (Yb{sub 0.24}Sn{sub 0.76})Ru that crystallizes in the cubic CsCl structure. Valence band photoemission and L{sub 3} x-ray absorption show no divalent component in the 4f configuration of Yb. Inelastic neutron scattering (INS) indicates that the eight-fold degenerate J-multiplet of Yb{sup 3+} is split by the crystalline electric field (CEF) into a Γ{sub 7} doublet ground state and a Γ{sub 8} quartet at an excitation energy 20 meV. The magnetic susceptibility can be fit very well by this CEF scheme under the assumption that a Γ{sub 6} excited state resides at 32 meV; however, the Γ{sub 8}/Γ{sub 6} transition expected at 12 meV was not observed in the INS. The resistivity follows a Bloch-Grüneisen law shunted by a parallel resistor, as is typical of systems subject to phonon scattering with no apparent magnetic scattering. All of these properties can be understood as representing simple local moment behavior of the trivalent Yb ion. At 1 K, there is a peak in specific heat that is too broad to represent a magnetic phase transition, consistent with absence of magnetic reflections in neutron diffraction. On the other hand, this peak also is too narrow to represent …
Date: July 18, 2011
Creator: Klimczuk, T.; Wang, C. H.; Lawrence, J. M.; Xu, Q.; Durakiewicz, T.; Ronning, F. et al.
System: The UNT Digital Library
Order and disorder in the local and long-range structure of the spin-glass pyrochlore, Tb{sub 2}Mo{sub 2}O{sub 7} (open access)

Order and disorder in the local and long-range structure of the spin-glass pyrochlore, Tb{sub 2}Mo{sub 2}O{sub 7}

To understand the origin of the spin-glass state in molybdate pyrochlores, the structure of Tb{sub 2}Mo{sub 2}O{sub 7} is investigated using two techniques: the long-range lattice structure was measured using neutron powder diffraction (NPD), and local structure information was obtained from the extended x-ray absorption fine structure (EXAFS) technique. While the long-range structure appears generally well ordered, enhanced mean-squared site displacements on the O(1) site and the lack of temperature dependence of the strongly anisotropic displacement parameters for both the Mo and O(1) sites indicate some disorder exists. Likewise, the local structure measurements indicate some Mo-Mo and Tb-O(1) nearest-neighbor disorder exists, similar to that found in the related spin-glass pyrochlore, Y{sub 2}Mo{sub 2}O{sub 7}. Although the freezing temperature in Tb{sub 2}Mo{sub 2}O{sub 7}, 25 K, is slightly higher than in Y{sub 2}Mo{sub 2}O{sub 7}, 22 K, the degree of local pair distance disorder is actually less in Tb{sub 2}Mo{sub 2}O{sub 7}. This apparent contradiction is considered in light of the interactions involved in the freezing process.
Date: February 11, 2011
Creator: Jiang, Yu; Huq, Ashfia; Booth, Corwin H.; Ehlers, Georg; Greedan, John E. & Gardner, Jason S.
System: The UNT Digital Library
Ultra Low Density and Highly Crosslinked Biocompatible Shape Memory Polyurethane Foams (open access)

Ultra Low Density and Highly Crosslinked Biocompatible Shape Memory Polyurethane Foams

None
Date: September 15, 2011
Creator: Singhal, P.; Rodriguez, J. N.; Small, W., IV; Eagleaston, S.; De Water, J. V.; Maitland, D. J. et al.
System: The UNT Digital Library
RHIC Performance for FY2011 Au+Au Heavy Ion Run (open access)

RHIC Performance for FY2011 Au+Au Heavy Ion Run

Following the Fiscal Year (FY) 2010 (Run-10) Relativistic Heavy Ion Collider (RHIC) Au+Au run, RHIC experiment upgrades sought to improve detector capabilities. In turn, accelerator improvements were made to improve the luminosity available to the experiments for this run (Run-11). These improvements included: a redesign of the stochastic cooling systems for improved reliability; a relocation of 'common' RF cavities to alleviate intensity limits due to beam loading; and an improved usage of feedback systems to control orbit, tune and coupling during energy ramps as well as while colliding at top energy. We present an overview of changes to the Collider and review the performance of the collider with respect to instantaneous and integrated luminosity goals. At the conclusion of the FY 2011 polarized proton run, preparations for heavy ion run proceeded on April 18, with Au+Au collisions continuing through June 28. Our standard operations at 100 GeV/nucleon beam energy was bracketed by two shorter periods of collisions at lower energies (9.8 and 13.5 GeV/nucleon), continuing a previously established program of low and medium energy runs. Table 1 summarizes our history of heavy ion operations at RHIC.
Date: September 4, 2011
Creator: Marr, G.; Ahrens, L.; Bai, M.; Beebe-Wang, J.; Blackler, I.; Blaskiewicz, M. et al.
System: The UNT Digital Library
LLNL's Experience with the 3rd ITWG Nuclear Forensics Round Robin - INMM 2011 (open access)

LLNL's Experience with the 3rd ITWG Nuclear Forensics Round Robin - INMM 2011

None
Date: May 31, 2011
Creator: Kristo, M J
System: The UNT Digital Library
RHIC Polarized proton operation (open access)

RHIC Polarized proton operation

The Relativistic Heavy Ion Collider (RHIC) operation as the polarized proton collider presents unique challenges since both luminosity(L) and spin polarization(P) are important. With longitudinally polarized beams at the experiments, the figure of merit is LP{sup 4}. A lot of upgrades and modifications have been made since last polarized proton operation. A 9 MHz rf system is installed to improve longitudinal match at injection and to increase luminosity. The beam dump was upgraded to increase bunch intensity. A vertical survey of RHIC was performed before the run to get better magnet alignment. The orbit control is also improved this year. Additional efforts are put in to improve source polarization and AGS polarization transfer efficiency. To preserve polarization on the ramp, a new working point is chosen such that the vertical tune is near a third order resonance. The overview of the changes and the operation results are presented in this paper. Siberian snakes are essential tools to preserve polarization when accelerating polarized beams to higher energy. At the same time, the higher order resonances still can cause polarization loss. As seen in RHIC, the betatron tune has to be carefully set and maintained on the ramp and during the store …
Date: March 28, 2011
Creator: Huang, H.; Ahrens, L.; Alekseev, I. G.; Aschenauer, E.; Atoian, G.; Bai, M. et al.
System: The UNT Digital Library
Colloid-based multiplexed method for screening plant biomass-degrading glycoside hydrolase activities in microbial communities (open access)

Colloid-based multiplexed method for screening plant biomass-degrading glycoside hydrolase activities in microbial communities

The enzymatic hydrolysis of long-chain polysaccharides is a crucial step in the conversion of biomass to lignocellulosic biofuels. The identification and characterization of optimal glycoside hydrolases is dependent on enzyme activity assays, however existing methods are limited in terms of compatibility with a broad range of reaction conditions, sample complexity, and especially multiplexity. The method we present is a multiplexed approach based on Nanostructure-Initiator Mass Spectrometry (NIMS) that allowed studying several glycolytic activities in parallel under diverse assay conditions. Although the substrate analogs carried a highly hydrophobic perfluorinated tag, assays could be performed in aqueous solutions due colloid formation of the substrate molecules. We first validated our method by analyzing known {beta}-glucosidase and {beta}-xylosidase activities in single and parallel assay setups, followed by the identification and characterization of yet unknown glycoside hydrolase activities in microbial communities.
Date: May 1, 2011
Creator: Reindl, W.; Deng, K.; Gladden, J. M.; Cheng, G.; Wong, A.; Singer, S. W. et al.
System: The UNT Digital Library
Parity Violation Constraints Using Cosmic Microwave Background Polarization Spectra from 2006 and 2007 Observations by the QUaD Polarimeter (open access)

Parity Violation Constraints Using Cosmic Microwave Background Polarization Spectra from 2006 and 2007 Observations by the QUaD Polarimeter

None
Date: November 29, 2011
Creator: Wu, E. Y. S.; Ade, P.; Bock, J.; Bowden, M.; Brown, M. L.; Cahill, G. et al.
System: The UNT Digital Library
Accelerated Stress Testing of Hydrocarbon-Based Encapsulants for Medium-Concentration CPV Applications (open access)

Accelerated Stress Testing of Hydrocarbon-Based Encapsulants for Medium-Concentration CPV Applications

Concentrating photovoltaic (CPV) systems have great potential to reduce photovoltaic (PV) electricity costs because of the relatively low cost of optical components as compared to PV cells. A transparent polymeric material is used to optically couple the PV cell to optical components and is thus exposed to the concentrated light source at elevated temperatures. In this work polymeric encapsulant materials are positioned close to a Xenon arc lamp to expose them to ultraviolet radiation (UV) that is about 42 times as intense as sunlight. Furthermore, different glass types are used as filters to modify the spectral distribution of light in the UV range. A strong sensitivity of non-silicone-based encapsulants to light below ~350 nm is demonstrated. Of all the materials examined in this study, the polydimethyl silicone samples performed the best. The next best material was an ionomer which maintained optical transmission but became photo-oxidized where exposed to the atmosphere.
Date: February 1, 2011
Creator: Kempe, M. D.; Moricone, T. J.; Kilkenny, M. & Zhang, J. Z.
System: The UNT Digital Library
The RHIC and RHIC Pre-Injectors Controls Systems: Status and Plans (open access)

The RHIC and RHIC Pre-Injectors Controls Systems: Status and Plans

For the past twelve years experiments at the Relativistic Heavy Ion Collider (RHIC) have recorded data from collisions of heavy ions and polarized protons, leading to important discoveries in nuclear physics and the spin dynamics of quarks and gluons. BNL is the site of one of the first and still operating alternating gradient synchrotrons, the AGS, which first operated in 1960. The accelerator controls systems for these instruments span multiple generations of technologies. In this report we will describe the current status of the Collider-Accelerator Department controls systems, which are used to control seven different accelerator facilities and multiple science programs (high energy nuclear physics, high energy polarized proton physics, NASA programs, isotope production, and multiple accelerator research and development projects). We will describe the status of current projects, such as the just completed Electron Beam Ion Source (EBIS), our R&D programs in superconducting RF and an Energy Recovery LINAC (ERL), innovations in feedback systems and bunched beam stochastic cooling at RHIC, and plans for future controls system developments.
Date: October 10, 2011
Creator: Brown, K. A.; Altinbas, Z.; Aronson, J.; Binello, S.; Campbell, I.; Costanzo, M. et al.
System: The UNT Digital Library
Evaporation kinetics of laser heated silica in reactive and inert gases based on near-equilibrium dynamics (open access)

Evaporation kinetics of laser heated silica in reactive and inert gases based on near-equilibrium dynamics

None
Date: June 12, 2011
Creator: Elhadj, S; Matthews, M J; Yang, S T & Cooke, D
System: The UNT Digital Library
Proton-Nucleus Collisions at the LHC: Scientific Opportunities and Requirements (open access)

Proton-Nucleus Collisions at the LHC: Scientific Opportunities and Requirements

None
Date: May 20, 2011
Creator: Salgado, C. A.; Alvarez-Muniz, J.; Arleo, F.; Armesto, N.; Botje, M.; Cacciari, M. et al.
System: The UNT Digital Library
Dynamic Topography Change of the Eastern U. S. since 4 Ma: Implications for Sea Level and Stratigraphic Architecture of Passive Margins (open access)

Dynamic Topography Change of the Eastern U. S. since 4 Ma: Implications for Sea Level and Stratigraphic Architecture of Passive Margins

None
Date: August 16, 2011
Creator: Rowley, D B; Forte, A M; Moucha, R; Mitrovica, J X; Simmons, N A & Grand, S P
System: The UNT Digital Library
Edge Zonal Flows and Blob Propagation in Alcator C-Mod (open access)

Edge Zonal Flows and Blob Propagation in Alcator C-Mod

Here we describe recent measurements of the 2-D motion of turbulence in the edge and scrape-off layer (SOL) of the Alcator C-Mod tokamak. This data was taken using the outer midplane gas puff imaging (GPI) camera, which views a 6 cm radial by 6 cm poloidal region near the separatrix just below the outer midplane [1]. The data were taken in Ohmic or RF heated L-mode plasmas at 400,000 frames/sec for {approx}50 msec/shot using a Phantom 710 camera in a 64 x 64 pixel format. The resulting 2-D vs. time movies [2] can resolve the structure and motion of the turbulence on a spatial scale covering 0.3-6 cm. The images were analyzed using either a 2-D cross-correlation code (Sec. 2) or a 2-D blob tracking code (Sec. 3).
Date: July 25, 2011
Creator: Zweben, S; Agostini, M; Davis, B; Grulke, O; Hager, R; Hughes, J et al.
System: The UNT Digital Library
The Microbial Detection Array Combined with Random Phi29-Amplification used as a Diagnostic Tool for Unbiased Virus Detection in Clinical Samples (open access)

The Microbial Detection Array Combined with Random Phi29-Amplification used as a Diagnostic Tool for Unbiased Virus Detection in Clinical Samples

None
Date: April 13, 2011
Creator: Erlandsson, L.; Rosenstierne, M. W.; McLoughlin, K.; Jaing, C. & Fomsgaard, A.
System: The UNT Digital Library
Novel QCD Phenomenology (open access)

Novel QCD Phenomenology

I review a number of topics where conventional wisdom in hadron physics has been challenged. For example, hadrons can be produced at large transverse momentum directly within a hard higher-twist QCD subprocess, rather than from jet fragmentation. Such 'direct' processes can explain the deviations from perturbative QCD predictions in measurements of inclusive hadron cross sections at fixed x{sub T} = 2p{sub T}/{radical}s, as well as the 'baryon anomaly', the anomalously large proton-to-pion ratio seen in high centrality heavy ion collisions. Initial-state and final-state interactions of the struck quark, the soft-gluon rescattering associated with its Wilson line, lead to Bjorken-scaling single-spin asymmetries, diffractive deep inelastic scattering, the breakdown of the Lam-Tung relation in Drell-Yan reactions, as well as nuclear shadowing and antishadowing. The Gribov-Glauber theory predicts that antishadowing of nuclear structure functions is not universal, but instead depends on the flavor quantum numbers of each quark and antiquark, thus explaining the anomalous nuclear dependence measured in deep-inelastic neutrino scattering. Since shadowing and antishadowing arise from the physics of leading-twist diffractive deep inelastic scattering, one cannot attribute such phenomena to the structure of the nucleus itself. It is thus important to distinguish 'static' structure functions, the probability distributions computed from the square …
Date: August 12, 2011
Creator: Brodsky, Stanley J. & /SLAC /Southern Denmark U., CP3-Origins
System: The UNT Digital Library
Widespread spin polarization effects in photoemission from topological insulators (open access)

Widespread spin polarization effects in photoemission from topological insulators

High-resolution spin- and angle-resolved photoemission spectroscopy (spin-ARPES) was performed on the three-dimensional topological insulator Bi{sub 2}Se{sub 3} using a recently developed high-efficiency spectrometer. The topological surface state's helical spin structure is observed, in agreement with theoretical prediction. Spin textures of both chiralities, at energies above and below the Dirac point, are observed, and the spin structure is found to persist at room temperature. The measurements reveal additional unexpected spin polarization effects, which also originate from the spin-orbit interaction, but are well differentiated from topological physics by contrasting momentum and photon energy and polarization dependencies. These observations demonstrate significant deviations of photoelectron and quasiparticle spin polarizations. Our findings illustrate the inherent complexity of spin-resolved ARPES and demonstrate key considerations for interpreting experimental results.
Date: June 22, 2011
Creator: Jozwiak, C.; Chen, Y. L.; Fedorov, A. V.; Analytis, J. G.; Rotundu, C. R.; Schmid, A. K. et al.
System: The UNT Digital Library
Evaluation and Modeling of Edge-Seal Materials for Photovoltaic Applications (open access)

Evaluation and Modeling of Edge-Seal Materials for Photovoltaic Applications

Because of the sensitivity of some photovoltaic devices to moisture-induced corrosion, they are packaged using impermeable front- and back-sheets along with an edge seal to prevent moisture ingress. Evaluation of edge seal materials can be difficult because of the low permeation rates involved and/or non-Fickian behavior. Here, using a Ca film deposited on a glass substrate, we demonstrate the evaluation of edge seal materials in a manner that effectively duplicates their use in a photovoltaic application and compare the results with standard methods for measuring water vapor transport. We demonstrate how moisture permeation data from polymer films can be used to estimate moisture ingress rates and compare the results of these two methods. Encapsulant materials were also evaluated for comparison and to highlight the need for edge seals. Of the materials studied, desiccant filled polyisobutylene materials demonstrate by far the best potential to keep moisture out for a 20 to 30 year lifetime.
Date: February 1, 2011
Creator: Kempe, M. D.; Dameron, A. A.; Moricone, T. J. & Reese, M. O.
System: The UNT Digital Library
New Perspectives for QCD Physics at the LHC (open access)

New Perspectives for QCD Physics at the LHC

I review a number of topics where conventional wisdom relevant to hadron physics at the LHC has been challenged. For example, the initial-state and final-state interactions of the quarks and gluons entering perturbative QCD hard-scattering subprocesses lead to the breakdown of traditional concepts of factorization and universality for transverse-momentum-dependent observables at leading twist. These soft-gluon rescattering effect produce single-spin asymmetries, the breakdown of the Lam-Tung relation in Drell-Yan reactions, as well as diffractive deep inelastic scattering, The antishadowing of nuclear structure functions is predicted to depend on the flavor quantum numbers of each quark and antiquark. Isolated hadrons can be produced at large transverse momentum directly within a hard higher-twist QCD subprocess, rather than from jet fragmentation, even at the LHC. Such 'direct' processes can explain the observed deviations from pQCD predictions of the power-law fall-off of inclusive hadron cross sections as well as the 'baryon anomaly' seen in high-centrality heavy-ion collisions at RHIC. The intrinsic charm contribution to the proton structure function at high x can explain the large rate for high p{sub T} photon plus charm-jet events observed at the Tevatron and imply a large production rate for charm and bottom jets at high p{sub T} at the …
Date: February 7, 2011
Creator: Brodsky, Stanley J. & /SLAC /Stanford U. /Southern Denmark U., CP3-Origins
System: The UNT Digital Library
Setting the Renormalization Scale in QCD: The Principle of Maximum Conformality (open access)

Setting the Renormalization Scale in QCD: The Principle of Maximum Conformality

A key problem in making precise perturbative QCD predictions is the uncertainty in determining the renormalization scale {mu} of the running coupling {alpha}{sub s}({mu}{sup 2}): The purpose of the running coupling in any gauge theory is to sum all terms involving the {beta} function; in fact, when the renormalization scale is set properly, all non-conformal {beta} {ne} 0 terms in a perturbative expansion arising from renormalization are summed into the running coupling. The remaining terms in the perturbative series are then identical to that of a conformal theory; i.e., the corresponding theory with {beta} = 0. The resulting scale-fixed predictions using the 'principle of maximum conformality' (PMC) are independent of the choice of renormalization scheme - a key requirement of renormalization group invariance. The results avoid renormalon resummation and agree with QED scale-setting in the Abelian limit. The PMC is also the theoretical principle underlying the BLM procedure, commensurate scale relations between observables, and the scale-setting method used in lattice gauge theory. The number of active flavors nf in the QCD {beta} function is also correctly determined. We discuss several methods for determining the PMC/BLM scale for QCD processes. We show that a single global PMC scale, valid at leading …
Date: August 19, 2011
Creator: Brodsky, Stanley J.; /SLAC /Southern Denmark U., CP3-Origins & Di Giustino, Leonardo
System: The UNT Digital Library
Expected Performance of the ATLAS Experiment - Detector, Trigger and Physics (open access)

Expected Performance of the ATLAS Experiment - Detector, Trigger and Physics

The Large Hadron Collider (LHC) at CERN promises a major step forward in the understanding of the fundamental nature of matter. The ATLAS experiment is a general-purpose detector for the LHC, whose design was guided by the need to accommodate the wide spectrum of possible physics signatures. The major remit of the ATLAS experiment is the exploration of the TeV mass scale where groundbreaking discoveries are expected. In the focus are the investigation of the electroweak symmetry breaking and linked to this the search for the Higgs boson as well as the search for Physics beyond the Standard Model. In this report a detailed examination of the expected performance of the ATLAS detector is provided, with a major aim being to investigate the experimental sensitivity to a wide range of measurements and potential observations of new physical processes. An earlier summary of the expected capabilities of ATLAS was compiled in 1999 [1]. A survey of physics capabilities of the CMS detector was published in [2]. The design of the ATLAS detector has now been finalised, and its construction and installation have been completed [3]. An extensive test-beam programme was undertaken. Furthermore, the simulation and reconstruction software code and frameworks have …
Date: November 28, 2011
Creator: Aad, G.; Abat, E.; Abbott, B.; Abdallah, J.; Abdelalim, A. A.; Abdesselam, A. et al.
System: The UNT Digital Library
The First Galaxies: Chemical Enrichment, Mixing, and Star Formation (open access)

The First Galaxies: Chemical Enrichment, Mixing, and Star Formation

None
Date: August 12, 2011
Creator: Greif, Thomas H.; /Garching, Max Planck Inst. Plasmaphys.; Glover, Simon C.O.; U., /Heidelberg; Bromm, Volker; /Texas U., Astron. Dept. et al.
System: The UNT Digital Library