Interim Report on Multiple Sequence Alignments and TaqMan Signature Mapping to Phylogenetic Trees (open access)

Interim Report on Multiple Sequence Alignments and TaqMan Signature Mapping to Phylogenetic Trees

The goal of this project is to develop forensic genotyping assays for select agent viruses, addressing a significant capability gap for the viral bioforensics and law enforcement community. We used a multipronged approach combining bioinformatics analysis, PCR-enriched samples, microarrays and TaqMan assays to develop high resolution and cost effective genotyping methods for strain level forensic discrimination of viruses. We have leveraged substantial experience and efficiency gained through year 1 on software development, SNP discovery, TaqMan signature design and phylogenetic signature mapping to scale up the development of forensics signatures in year 2. In this report, we have summarized the Taqman signature development for South American hemorrhagic fever viruses, tick-borne encephalitis viruses and henipaviruses, Old World Arenaviruses, filoviruses, Crimean-Congo hemorrhagic fever virus, Rift Valley fever virus and Japanese encephalitis virus.
Date: March 27, 2012
Creator: Gardner, S & Jaing, C
Object Type: Report
System: The UNT Digital Library
Interim report on updated microarray probes for the LLNL Burkholderia pseudomallei SNP array (open access)

Interim report on updated microarray probes for the LLNL Burkholderia pseudomallei SNP array

The overall goal of this project is to forensically characterize 100 unknown Burkholderia isolates in the US-Australia collaboration. We will identify genome-wide single nucleotide polymorphisms (SNPs) from B. pseudomallei and near neighbor species including B. mallei, B. thailandensis and B. oklahomensis. We will design microarray probes to detect these SNP markers and analyze 100 Burkholderia genomic DNAs extracted from environmental, clinical and near neighbor isolates from Australian collaborators on the Burkholderia SNP microarray. We will analyze the microarray genotyping results to characterize the genetic diversity of these new isolates and triage the samples for whole genome sequencing. In this interim report, we described the SNP analysis and the microarray probe design for the Burkholderia SNP microarray.
Date: March 27, 2012
Creator: Gardner, S & Jaing, C
Object Type: Report
System: The UNT Digital Library
Limit of detection of Bacillus anthracis in complex soil and air samples using next-generation sequencing (open access)

Limit of detection of Bacillus anthracis in complex soil and air samples using next-generation sequencing

None
Date: March 15, 2012
Creator: Be, Nicholas A.; Thissen, James B.; Gardner, Shea; McLoughlin, Kevin; Fofanov, Viacheslav; Koshinsky, Heather et al.
Object Type: Article
System: The UNT Digital Library

Still the Arena of Civil War: Violence and Turmoil in Reconstruction Texas, 1865/1874

Access: Use of this item is restricted to the UNT Community
Following the Civil War, the United States was fully engaged in a bloody conflict with ex-Confederates, conservative Democrats, and members of organized terrorist groups, such as the Ku Klux Klan, for control of the southern states. Texas became one of the earliest battleground states in the War of Reconstruction. Throughout this era, white Texans claimed that Radical Republicans in Congress were attempting to dominate their state through “Negro-Carpetbag-Scalawag rule.” In response to these perceived threats, whites initiated a violent guerilla war that was designed to limit support for the Republican Party. They targeted loyal Unionists throughout the South, especially African Americans who represented the largest block of Republican voters in the region. Was the Reconstruction era in the Lone Star State simply a continuation of the Civil War? Evidence presented by sixteen contributors in this new anthology, edited by Kenneth W. Howell, argues that this indeed was the case. Topics include the role of the Freedmen’s Bureau and the occupying army, focusing on both sides of the violence. Several contributors analyze the origins of the Ku Klux Klan and its operations in Texas, how the Texas State Police attempted to quell the violence, and Tejano adjustment to Reconstruction. Other chapters …
Date: March 15, 2012
Creator: Howell, Kenneth W.
Object Type: Book
System: The UNT Digital Library
Novel Perspectives for Hadron Physics (open access)

Novel Perspectives for Hadron Physics

I discuss several novel and unexpected aspects of quantum chromodynamics. These include: (a) the nonperturbative origin of intrinsic strange, charm and bottom quarks in the nucleon at large x; the breakdown of pQCD factorization theorems due to the lensing effects of initial- and final-state interactions; (b) important corrections to pQCD scaling for inclusive reactions due to processes in which hadrons are created at high transverse momentum directly in the hard processes and their relation to the baryon anomaly in high-centrality heavy-ion collisions; and (c) the nonuniversality of quark distributions in nuclei. I also discuss some novel theoretical perspectives in QCD: (a) light-front holography - a relativistic color-confining first approximation to QCD based on the AdS/CFT correspondence principle; (b) the principle of maximum conformality - a method which determines the renormalization scale at finite order in perturbation theory yielding scheme independent results; (c) the replacement of quark and gluon vacuum condensates by 'in-hadron condensates' and how this helps to resolve the conflict between QCD vacuum and the cosmological constant.
Date: March 9, 2012
Creator: Brodsky, Stanley J.
Object Type: Article
System: The UNT Digital Library
Evaluation of Visual Impact on Cultural Resources/Historic Properties: North Atlantic, Mid-Atlantic, South Atlantic, and Florida Straits, Volume 2: Appendices (open access)

Evaluation of Visual Impact on Cultural Resources/Historic Properties: North Atlantic, Mid-Atlantic, South Atlantic, and Florida Straits, Volume 2: Appendices

A list of appendices for reference to the "Evaluation of Visual Impact on Cultural Resources/Historic Properties: North Atlantic, Mid-Atlantic, South Atlantic, and Florida Straits" study.
Date: March 2012
Creator: Klein, Joel I.; Harris, Matthew D.; Tankersley, W. Matthew; Meyer, Richard; Smith, Greg C. & Chadwick, William J.
Object Type: Text
System: The UNT Digital Library
Messiah College Biodiesel Fuel Generation Project Final Technical Report (open access)

Messiah College Biodiesel Fuel Generation Project Final Technical Report

Many obvious and significant concerns arise when considering the concept of small-scale biodiesel production. Does the fuel produced meet the stringent requirements set by the commercial biodiesel industry? Is the process safe? How are small-scale producers collecting and transporting waste vegetable oil? How is waste from the biodiesel production process handled by small-scale producers? These concerns and many others were the focus of the research preformed in the Messiah College Biodiesel Fuel Generation project over the last three years. This project was a unique research program in which undergraduate engineering students at Messiah College set out to research the feasibility of small-biodiesel production for application on a campus of approximately 3000 students. This Department of Energy (DOE) funded research program developed out of almost a decade of small-scale biodiesel research and development work performed by students at Messiah College. Over the course of the last three years the research team focused on four key areas related to small-scale biodiesel production: Quality Testing and Assurance, Process and Processor Research, Process and Processor Development, and Community Education. The objectives for the Messiah College Biodiesel Fuel Generation Project included the following: 1. Preparing a laboratory facility for the development and optimization of processors …
Date: March 30, 2012
Creator: Zummo, Michael M.; Munson, J.; Derr, A.; Zemple, T.; Bray, S.; Studer, B. et al.
Object Type: Report
System: The UNT Digital Library
Radar-cross-section reduction of wind turbines. part 1. (open access)

Radar-cross-section reduction of wind turbines. part 1.

In recent years, increasing deployment of large wind-turbine farms has become an issue of growing concern for the radar community. The large radar cross section (RCS) presented by wind turbines interferes with radar operation, and the Doppler shift caused by blade rotation causes problems identifying and tracking moving targets. Each new wind-turbine farm installation must be carefully evaluated for potential disruption of radar operation for air defense, air traffic control, weather sensing, and other applications. Several approaches currently exist to minimize conflict between wind-turbine farms and radar installations, including procedural adjustments, radar upgrades, and proper choice of low-impact wind-farm sites, but each has problems with limited effectiveness or prohibitive cost. An alternative approach, heretofore not technically feasible, is to reduce the RCS of wind turbines to the extent that they can be installed near existing radar installations. This report summarizes efforts to reduce wind-turbine RCS, with a particular emphasis on the blades. The report begins with a survey of the wind-turbine RCS-reduction literature to establish a baseline for comparison. The following topics are then addressed: electromagnetic model development and validation, novel material development, integration into wind-turbine fabrication processes, integrated-absorber design, and wind-turbine RCS modeling. Related topics of interest, including alternative …
Date: March 5, 2012
Creator: Brock, Billy C.; Loui, Hung; McDonald, Jacob J.; Paquette, Joshua A.; Calkins, David A.; Miller, William K. et al.
Object Type: Report
System: The UNT Digital Library
Sweetwater Reporter (Sweetwater, Tex.), Vol. 114, No. 042, Ed. 1 Tuesday, March 6, 2012 (open access)

Sweetwater Reporter (Sweetwater, Tex.), Vol. 114, No. 042, Ed. 1 Tuesday, March 6, 2012

Daily newspaper from Sweetwater, Texas that includes local, state, and national news along with advertising.
Date: March 6, 2012
Creator: unknown
Object Type: Newspaper
System: The Portal to Texas History
[Funeral Program for Floyd Wayne Sattiewhite, March 27, 2012] (open access)

[Funeral Program for Floyd Wayne Sattiewhite, March 27, 2012]

Funeral program for Floyd Wayne "Bucky" Sattiewhite, born August 5, 1955 and died March 13, 2012. The funeral was held March 27, 2012 at Calvary Baptist Church, officiated by Pastor Kevin Nelson. Funeral arrangements were made through D.W. Brooks Funeral Home and he was buried in Fort Sam Houston National Cemetery in San Antonio, Texas.
Date: March 27, 2012
Creator: unknown
Object Type: Pamphlet
System: The Portal to Texas History
Integrated Detection of Pathogens and Host Biomarkers for Wounds (open access)

Integrated Detection of Pathogens and Host Biomarkers for Wounds

The increasing incidence and complications arising from combat wounds has necessitated a reassessment of methods for effective treatment. Infection, excessive inflammation, and incidence of drug-resistant organisms all contribute toward negative outcomes for afflicted individuals. The organisms and host processes involved in wound progression, however, are incompletely understood. We therefore set out, using our unique technical resources, to construct a profile of combat wounds which did or did not successfully resolve. We employed the Lawrence Livermore Microbial Detection Array and identified a number of nosocomial pathogens present in wound samples. Some of these identities corresponded with bacterial isolates previously cultured, while others were not obtained via standard microbiology. Further, we optimized proteomics protocols for the identification of host biomarkers indicative of various stages in wound progression. In combination with our pathogen data, our biomarker discovery efforts will provide a profile corresponding to wound complications, and will assist significantly in treatment of these complex cases.
Date: March 19, 2012
Creator: Jaing, C
Object Type: Report
System: The UNT Digital Library
Sweetwater Reporter (Sweetwater, Tex.), Vol. 114, No. 038, Ed. 1 Thursday, March 1, 2012 (open access)

Sweetwater Reporter (Sweetwater, Tex.), Vol. 114, No. 038, Ed. 1 Thursday, March 1, 2012

Daily newspaper from Sweetwater, Texas that includes local, state, and national news along with advertising.
Date: March 1, 2012
Creator: unknown
Object Type: Newspaper
System: The Portal to Texas History
Port Aransas South Jetty (Port Aransas, Tex.), Vol. 41, No. 12, Ed. 1 Thursday, March 22, 2012 (open access)

Port Aransas South Jetty (Port Aransas, Tex.), Vol. 41, No. 12, Ed. 1 Thursday, March 22, 2012

Weekly newspaper from Port Aransas, Texas on Mustang Island that includes local, state and national news along with extensive advertising.
Date: March 22, 2012
Creator: Judson, Mary Henkel
Object Type: Newspaper
System: The Portal to Texas History
Aleutian Pribilof Islands Wind Energy Feasibility Study (open access)

Aleutian Pribilof Islands Wind Energy Feasibility Study

Under this project, the Aleutian Pribilof Islands Association (APIA) conducted wind feasibility studies for Adak, False Pass, Nikolski, Sand Point and St. George. The DOE funds were also be used to continue APIA's role as project coordinator, to expand the communication network quality between all participants and with other wind interest groups in the state and to provide continued education and training opportunities for regional participants. This DOE project began 09/01/2005. We completed the economic and technical feasibility studies for Adak. These were funded by the Alaska Energy Authority. Both wind and hydro appear to be viable renewable energy options for Adak. In False Pass the wind resource is generally good but the site has high turbulence. This would require special care with turbine selection and operations. False Pass may be more suitable for a tidal project. APIA is funded to complete a False Pass tidal feasibility study in 2012. Nikolski has superb potential for wind power development with Class 7 wind power density, moderate wind shear, bi-directional winds and low turbulence. APIA secured nearly $1M from the United States Department of Agriculture Rural Utilities Service Assistance to Rural Communities with Extremely High Energy Costs to install a 65kW wind …
Date: March 27, 2012
Creator: Wright, Bruce A.
Object Type: Report
System: The UNT Digital Library
Hudspeth County Herald and Dell Valley Review (Dell City, Tex.), Vol. 56, No. 20, Ed. 1 Friday, March 30, 2012 (open access)

Hudspeth County Herald and Dell Valley Review (Dell City, Tex.), Vol. 56, No. 20, Ed. 1 Friday, March 30, 2012

Weekly newspaper from Dell City, Texas that includes local, state, and national news along with advertising.
Date: March 30, 2012
Creator: Stuart, Andrew
Object Type: Newspaper
System: The Portal to Texas History
The Nocona News (Nocona, Tex.), Vol. 107, No. 43, Ed. 1 Thursday, March 29, 2012 (open access)

The Nocona News (Nocona, Tex.), Vol. 107, No. 43, Ed. 1 Thursday, March 29, 2012

Weekly newspaper from Nocona, Texas that includes local, state, and national news along with advertising.
Date: March 29, 2012
Creator: Mesler, Tracy R. & Mesler, Linda L.
Object Type: Newspaper
System: The Portal to Texas History
Hilltop Views (Austin, Tex.), Vol. 31, No. 8, Ed. 1 Wednesday, March 28, 2012 (open access)

Hilltop Views (Austin, Tex.), Vol. 31, No. 8, Ed. 1 Wednesday, March 28, 2012

Weekly student newspaper from St. Edward's University in Austin, Texas that includes news and information of interest to the college community along with advertising.
Date: March 28, 2012
Creator: unknown
Object Type: Newspaper
System: The Portal to Texas History
Cherokeean Herald (Rusk, Tex.), Vol. 163, No. 5, Ed. 1 Wednesday, March 28, 2012 (open access)

Cherokeean Herald (Rusk, Tex.), Vol. 163, No. 5, Ed. 1 Wednesday, March 28, 2012

Weekly newspaper from Rusk, Texas that includes local, state and national news along with extensive advertising.
Date: March 28, 2012
Creator: Gonzalez, Terrie
Object Type: Newspaper
System: The Portal to Texas History
The Suburbia News (Seagoville, Tex.), Vol. 40, No. 17, Ed. 1 Thursday, March 15, 2012 (open access)

The Suburbia News (Seagoville, Tex.), Vol. 40, No. 17, Ed. 1 Thursday, March 15, 2012

Weekly newspaper from Seagoville, Texas that includes local, state and national news along with advertising.
Date: March 15, 2012
Creator: unknown
Object Type: Newspaper
System: The Portal to Texas History
The Baytown Sun (Baytown, Tex.), Vol. 92, No. 59, Ed. 1 Friday, March 23, 2012 (open access)

The Baytown Sun (Baytown, Tex.), Vol. 92, No. 59, Ed. 1 Friday, March 23, 2012

Daily newspaper from Baytown, Texas that includes local, state, and national news along with advertising.
Date: March 23, 2012
Creator: Yanelli, Adam
Object Type: Newspaper
System: The Portal to Texas History
The Optimist (Abilene, Tex.), Vol. 100, No. 47, Ed. 1 Wednesday, March 28, 2012 (open access)

The Optimist (Abilene, Tex.), Vol. 100, No. 47, Ed. 1 Wednesday, March 28, 2012

Bi-weekly student newspaper from Abilene Christian University in Abilene, Texas that includes local, state and campus news along with advertising.
Date: March 28, 2012
Creator: unknown
Object Type: Newspaper
System: The Portal to Texas History
The Christian Chronicle (Oklahoma City, Okla.), Vol. 69, No. 3, Ed. 1 Thursday, March 1, 2012 (open access)

The Christian Chronicle (Oklahoma City, Okla.), Vol. 69, No. 3, Ed. 1 Thursday, March 1, 2012

Monthly newspaper from Oklahoma City, Oklahoma that includes news and information about the Churches of Christ along with advertising.
Date: March 1, 2012
Creator: McMillon, Lynn
Object Type: Newspaper
System: The Portal to Texas History
APPLICATION OF COLUMN EXTRACTION METHOD FOR IMPURITIES ANALYSIS ON HB-LINE PLUTONIUM OXIDE IN SUPPORT OF MOX FEED PRODUCT SPECIFICATIONS (open access)

APPLICATION OF COLUMN EXTRACTION METHOD FOR IMPURITIES ANALYSIS ON HB-LINE PLUTONIUM OXIDE IN SUPPORT OF MOX FEED PRODUCT SPECIFICATIONS

The current mission at H-Canyon involves the dissolution of an Alternate Feedstocks 2 (AFS-2) inventory that contains plutonium metal. Once dissolved, HB-Line is tasked with purifying the plutonium solution via anion exchange, precipitating the Pu as oxalate, and calcining to form plutonium oxide (PuO{sub 2}). The PuO{sub 2} will provide feed product for the Mixed Oxide (MOX) Fuel Fabrication Facility, and the anion exchange raffinate will be transferred to H-Canyon. The results presented in this report document the potential success of the RE resin column extraction application on highly concentrated Pu samples to meet MOX feed product specifications. The original 'Hearts Cut' sample required a 10000x dilution to limit instrument drift on the ICP-MS method. The instrument dilution factors improved to 125x and 250x for the sample raffinate and sample eluent, respectively. As noted in the introduction, the significantly lower dilutions help to drop the total MRL for the analyte. Although the spike recoveries were half of expected in the eluent for several key elements, they were between 94-98% after Nd tracer correction. It is seen that the lower ICD limit requirements for the rare earths are attainable because of less dilution. Especially important is the extremely low Ga limit …
Date: March 20, 2012
Creator: Jones, M.; Diprete, D. & Wiedenman, B.
Object Type: Report
System: The UNT Digital Library
The Albany News (Albany, Tex.), Vol. 136, No. 45, Ed. 1 Thursday, March 29, 2012 (open access)

The Albany News (Albany, Tex.), Vol. 136, No. 45, Ed. 1 Thursday, March 29, 2012

Weekly newspaper from Albany, Texas that includes local, state and national news along with advertising.
Date: March 29, 2012
Creator: Lucas, Melinda L.
Object Type: Newspaper
System: The Portal to Texas History